LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g0838	ATGATAAGAAGCAAATATCTTCCTCCAAATGGTGTTGACCATGATGGTGAGAACTCAAGGACCAAGTCATCAAGACACAATTTTGAACCCAATAAGGAATACCCAGATGAAAAAGATGTTGAATTTCTAAGAGATTCAGAGGTTGTTGATAAGATTCTTCATTCAAAATTGAATCTTGTTGAGAAAGAGAAGAGTTTGTTGAATTATTCAATGGAAAAAGTGAGTCAGAAAGGTAAAGAAGTTGTTGCTTTTTCTGAGAATTCAAATCAGGATAGAAAATGGGTAGAAAGAGATTTTTTGAGGTTGAGTGAATCAAAAGAGAATTCTTCAAAGAGAACAATTGAAGAAGAAGAAGTTGAAAATGAAAGTTATAGTGAGAAAAAGCAAAAGCTAGAAACACTTAATCTTTCTCTTGCTTTGCCTAATGTATCACTTTCTCTTACTGCTTCAAATGCTTTGCAAAATAAGTCTACTATGCCTTTAACTACAACTCATACTTCATTCTCAAATGATTATACTTCACATTCTTTGTCTTACTCTTTTTCTCACCAGTTTTCACATAACCCAAGTTGCTCAATCACACACAATTCAACTGAGAATTTTGATTATTCAGTGAGCAAAGATGACCCTATTTGGAATTGTGATGAGGGTACTAATGGTTCTGTTCATAGCAGGTTTAAGCCAATAGGAGATAGTGGTGGTGTTGCTTTCTCCAACTATGGTGCTAGTGGTTTTAGTTCCTTTATGCAACAAGGTAATAATAGTCAAAATAAAACTACTAGTTCAGGAAATCATTCATTTTTTCCTTCAGAATTGCATGCTAGAACAAGAAATTCTGAGAATTTTAGAGTCTTGGATGGTTTAGATTGTGGGAAGATAATGAAATTTTCTAGGCCCGAGAGAATAATCGGAGAGATTGTTTCTGAGTCTATACCTGCTATGGCAGTGACAATTCAGGAGCTTACTGATGAGGTTATAGCATCGACTAAGGAATATTTGAAGAATCTCATTGAGAAGGGTGAGAAGAAAGAGGAATTTGTAAGCCTTCAAAACAGGCTTGAGAGAAGATCCGATCTTACGAAAGAGAGTCTTTCGAAGTGCCATAAAGTGCAGTTAGAGGTTCTTGTTGCGGTTAAGATGGGGCACGCGAGTTTCTTATCTGGTAAAGTTAACTTATCCGAGATGGTAGAGATTTTCTTGTATATGAGATGTAGAAATGTGAACTGCAAGAGTTTGCTTCCGGTCGATGATTGTGAATGCAAGATTTGCTCCGGGAATAAGGGGTTTTGTAGTTCTTGTATGTGTCCGGTATGTATGAACTTTGATTGTGCAAACAATACTTGTAGTTGGATTGGTTGCGATGTTTGTTCACATTGGTGCCATGCTACTTGTGGCATTCAGAGGAATCTCATCAAGCCCGGGCCTAGCTTGAAGGGACCTTCAGGGTCCTCAGAGGTGCAGTTTCATTGTATTGGATGTGGACAAGTTTCGGAAATGTTCGGGTTTGTTAAAGATGTGTTTGTCTGTTGTGCGAAGGATTGGGGTATAGAAACTTTGATGAAAGAGCTTGACTGTGTACGGAGGATTTTTCGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAGAACAGATGATATGCTGTTAAAGCTTCAAACTAAAACGGTTGCTCCTTCAGATGCCTGCAACTACATCATACAATTTTTCAGCTATGCCGATAGCATGTCCGACTTTCCTGCTCCTTGCATATCTTCAAAGGATTTGGCAACAACTCAAGCTAAGCATTCAAAGGAAAACCCATCTTTTCCAAAATATCCGTATGACATCAGCTATTCTCGGTCACAGTCAGATGCTCATGCCATGTCAAATGATCATCCTCAAAAAGACCTCAAAGCTTCCCTCTTAAGTGAACTCAAAACTGAGGCTGATTTCCATTTGGGGGCTTTATTAAGGAAAGGCGGGGTCGAAAGCTTGGAGAGCGTCGTGCGGATAAAGGAGGCAGAGGCGAGAATGTTCCAAACTAAGGCGGATGAAGCGAAGCGAGAGGCAGAAGGATTCCAGAGGATGATAAGGACAAAGACTGCACAGATGGAAGAAGAGTATGCTGAGAAGCTTGGCAAGGTGTGTTTGCATGAGACCGAGGAAACGCGGATGAAGAAATCGGAGGAGCTGAAAGTGTTGGAAATTAATCATTATGATTACTATAAAATGAAAATGAGAATGCAAGATGAGATTGCTGGTTTGTTGGAGAGAATGGAAGCAACAAAACAACAGTGGATTTAA	2286	0.3915	MIRSKYLPPNGVDHDGENSRTKSSRHNFEPNKEYPDEKDVEFLRDSEVVDKILHSKLNLVEKEKSLLNYSMEKVSQKGKEVVAFSENSNQDRKWVERDFLRLSESKENSSKRTIEEEEVENESYSEKKQKLETLNLSLALPNVSLSLTASNALQNKSTMPLTTTHTSFSNDYTSHSLSYSFSHQFSHNPSCSITHNSTENFDYSVSKDDPIWNCDEGTNGSVHSRFKPIGDSGGVAFSNYGASGFSSFMQQGNNSQNKTTSSGNHSFFPSELHARTRNSENFRVLDGLDCGKIMKFSRPERIIGEIVSESIPAMAVTIQELTDEVIASTKEYLKNLIEKGEKKEEFVSLQNRLERRSDLTKESLSKCHKVQLEVLVAVKMGHASFLSGKVNLSEMVEIFLYMRCRNVNCKSLLPVDDCECKICSGNKGFCSSCMCPVCMNFDCANNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGSSEVQFHCIGCGQVSEMFGFVKDVFVCCAKDWGIETLMKELDCVRRIFRGSEDRKGKELHVRTDDMLLKLQTKTVAPSDACNYIIQFFSYADSMSDFPAPCISSKDLATTQAKHSKENPSFPKYPYDISYSRSQSDAHAMSNDHPQKDLKASLLSELKTEADFHLGALLRKGGVESLESVVRIKEAEARMFQTKADEAKREAEGFQRMIRTKTAQMEEEYAEKLGKVCLHETEETRMKKSEELKVLEINHYDYYKMKMRMQDEIAGLLERMEATKQQWI*	762

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan1g0838	761	Coils	Coil	663	697	-	-
	Lan1g0838	761	Pfam	Coiled-coil region of Oberon	623	750	IPR032535	-
	Lan1g0838	761	PANTHER	PROTEIN OBERON 3	35	760	-	-
	Lan1g0838	761	Coils	Coil	114	134	-	-
	Lan1g0838	761	CDD	PHD_OBE1_like	434	493	-	-
	Lan1g0838	761	Pfam	PHD - plant homeodomain finger protein	404	528	IPR032881	-
	Lan1g0838	761	MobiDBLite	consensus disorder prediction	249	269	-	-
	Lan1g0838	761	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	35	760	IPR004082	-
	Lan1g0838	761	MobiDBLite	consensus disorder prediction	15	39	-	-
	Lan1g0838	761	Coils	Coil	711	731	-	-
	Lan1g0838	761	Coils	Coil	739	759	-	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	317	339	IPR004082	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	356	371	IPR004082	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	395	416	IPR004082	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	441	461	IPR004082	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	514	533	IPR004082	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	657	677	IPR004082	-
	Lan1g0838	761	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	696	718	IPR004082	-
	Lan1g0838	761	MobiDBLite	consensus disorder prediction	1	39	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g0838	Lan-Chr1	19160244	19164551	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g0838	404	533	PHD Gene Family	AT5G57380	24.615	7.21e-09	57.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g0838	-		-	gmx:100820216	1139.41