Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0825 ATGGTAGCCCAATCACAATCTCAACATCAGATTCAGACTCCAACACTTTCTTCACATGATGAAGCTCTGAAGAGGAACACCGATTGTGTCTACTTTCTTGCATCTCCTCTTACATGCAAAAAGGGAAATGAATGTGAGTACCGGCATAGCGAGTATGCTCGGGTTAATCCTAGGGATTGCTGGTATTGGTTAAACGGCAATTGCTTAAATCCGAAGTGCTCATTCCGTCATCCGCCTCTTGATGGCTTATTAGGAACACCACCAGCCACTGCTGCTGGACCATCTGTGCCACCGTTACAGCATCCAACACCGTCTGCAACACATGCACCATATAATTCTAGTAAACCAGCTGTCCCTTGCATTTTCTTCCAAAAAGGACTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCACGGACCAATTCCTAATGCTGGTAACAAAGCAGTTACCCAGGCCCCGGTGAATAGTCAAGGAGCTGAGCCTCAGAGTTTTAAGAAGACATTTGGCGGCATTGAAAAGAATAATACACAAGATAGGAAAATTTCCCAAGGAAATGTTGCAAAGCCAGTTGGAGGTTTTGAAGCAAAACCTGCCCAAAAAGTTGGAACTGCTCCACAAAAGAAAATTTTTGAGTTGAAGAAGCATGTGCCACCGCCATCTACAGGATTTGAGGACGAGGTTTCAGAATTTGAGATAATAAGTACCCCACAGGTGACCGATGAGCCCACTATAGTCATGTCTAGTCGTCTGCATCAAGCTTATGTGCCAGATGATAATGGCTTCCACAATGGTAAGGACAATGATGAGTTTCTCAGAGAATCATCTCCTGGATTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTATCATGGAGAAGATGAGTTTGGAAACACGAGAGGTCAGGATGAAAGGAACTTGGACTCTTTGAGTGAGTATGATCTAGGACATTCTGCTGATTATAATTTAGCGGCTGATATTGGCCGAGATAGATTTCGTGTGCAAGAGACATACATGTGGGAGCAACACAGAAAGCCATCAGCCCATTTAGAAAGGACTCACCGCAGATCTGACAGTCCTAACAATGCTGAGGTCTCAGATCTCCGACTTCATTTATCCAAGCGCAGGAAGAGTAATGGTTTGAAATCTGTTGTGGCACAGGATTGTGCTCGTGAAAGCCATGGCGAGGAACATAGTCATCGGCACTTCCCTAGGAAGGATTCACTCCAGTTACCTTCGAATGAGAGCTCAATCAGTAATCGATTCCGAGGACGAATTAAACTTCCAGGAAATGGTGGTGATGGTCGCCCAGAGAGGGAATCTGACAGAAGAGTTGGGAGCAGATTGTCATCTGGAAGGTTACCAGCCCCTCATCACGGAATGCTGCAAGATAGAATTAGAGGCAGGGTGCAAGATGGTGAGAGGAGAAACTTCAGGGATCGACCGGTGGGTAGAGAACTAACGGGGGACAGAACCAATGGTTTTTATGTGCCAAAACGTCTTTCTGAACATAAAAATGGGAGGAGCAGTGAGAACAGGGACCAACAGTTTCTGGGAAAGAGAAAAGGTTTAAGGGATAACCAACAATCTGATGATGGTTTTCAGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAGAGAGGAGTCGGAGTTGGTGCAGCCCCCCCGAGTGGCAATTCATCCGAGAATAATAATACAGAAATGACCGACAACTCAGATCATAAATCTCTCACAAAGACACAAAATGGATCATTGTCCGAGACCATGGAGAATGTCAAGAACCATGAAGAAGGATCCAAGTCTCAGGCCATTGATGCGGTTGGAAAAAATGCAGTTAATACTGATACAACTCACGGTCAATCATCTGAGAAAGAACCGATCTATGATGAAGCCATGGAGGATCAAGAATATGAAGGTGATGATCAGAGGGATGACGGGGACTATGACTATGATCAAGTCGATGAGGGGTACTATGAGTATGAACAAGTCGAGGAAGGTGAAAATCCAGATCAAGAAGAATACATAGATGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTTACATAA 2097 0.4425 MVAQSQSQHQIQTPTLSSHDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPATAAGPSVPPLQHPTPSATHAPYNSSKPAVPCIFFQKGLCLKGDRCAFLHGPIPNAGNKAVTQAPVNSQGAEPQSFKKTFGGIEKNNTQDRKISQGNVAKPVGGFEAKPAQKVGTAPQKKIFELKKHVPPPSTGFEDEVSEFEIISTPQVTDEPTIVMSSRLHQAYVPDDNGFHNGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNTRGQDERNLDSLSEYDLGHSADYNLAADIGRDRFRVQETYMWEQHRKPSAHLERTHRRSDSPNNAEVSDLRLHLSKRRKSNGLKSVVAQDCARESHGEEHSHRHFPRKDSLQLPSNESSISNRFRGRIKLPGNGGDGRPERESDRRVGSRLSSGRLPAPHHGMLQDRIRGRVQDGERRNFRDRPVGRELTGDRTNGFYVPKRLSEHKNGRSSENRDQQFLGKRKGLRDNQQSDDGFQFEGPKPLSEILKEKKRGVGVGAAPPSGNSSENNNTEMTDNSDHKSLTKTQNGSLSETMENVKNHEEGSKSQAIDAVGKNAVNTDTTHGQSSEKEPIYDEAMEDQEYEGDDQRDDGDYDYDQVDEGYYEYEQVEEGENPDQEEYIDDEDGDDFAKKIGVMLT* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0825 698 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 6 697 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 391 410 - -
Lan1g0825 698 ProSiteProfiles Zinc finger C3H1-type profile. 54 80 IPR000571 GO:0046872
Lan1g0825 698 MobiDBLite consensus disorder prediction 635 685 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 581 595 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 344 376 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 462 489 - -
Lan1g0825 698 ProSiteProfiles Zinc finger C3H1-type profile. 23 52 IPR000571 GO:0046872
Lan1g0825 698 MobiDBLite consensus disorder prediction 434 449 - -
Lan1g0825 698 Pfam RNA-binding, Nab2-type zinc finger 119 139 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 344 688 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 86 110 - -
Lan1g0825 698 ProSiteProfiles Zinc finger C3H1-type profile. 114 141 IPR000571 GO:0046872
Lan1g0825 698 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 6 697 - -
Lan1g0825 698 MobiDBLite consensus disorder prediction 612 627 - -
Lan1g0825 698 Pfam Zinc-finger containing family 24 78 IPR041686 -
Lan1g0825 698 SUPERFAMILY CCCH zinc finger 115 139 IPR036855 GO:0046872
Lan1g0825 698 MobiDBLite consensus disorder prediction 499 530 - -
Lan1g0825 698 Gene3D - 15 80 - -
Lan1g0825 698 Gene3D - 106 178 - -
Lan1g0825 698 SMART c3hfinal6 56 79 IPR000571 GO:0046872
Lan1g0825 698 SMART c3hfinal6 115 140 IPR000571 GO:0046872
Lan1g0825 698 SMART c3hfinal6 24 51 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0825 Lan-Chr1 19022411 19025999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g0825 zf-CCCH_3 6.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0825 - - lang:109359705 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0377 12 8946939 8950286 Lan1g0825 1 19022411 19025999 LSH
Lan1g1650 1 28645146 28648653 Lan1g0825 1 19022411 19025999 LSH