LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g0787	ATGGGTAAAGAAGAAGAAGAAGAATTTACAAAGATGGAAATTGATCTCTCTTTGAAGATAGACCCTGATGAGCATAATGAAGAAGAAGAAGAAGAAGCAAAGGTAGATGAGAGAGTGGAAGAGAATGATGAGGTGCAAGAAATAGCAAGGAAAGAGAATAATGAATATGTTCCTGAAGCCATAGGTGGTGAAATTGAAGATGATGCTTCAGTAGTAGAATTATCTTTGCAAGATAACACAAAAACAAAAGAGTTAAGTATATTACAAATGGAGATGGAGAACATGAAAGAGGAAAACAAAGTTCTAAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTACAAATGAAATTTTCAATCATCCAAGAAAACAATAAAAGAAAGGATCATCAAATTTCTCTCTCACTTGAAGACATAATAACCACTAGCAATGAAGGATCATCAAGAATTTTTGAGATCTTCAACAATACCAAAATCCATAGAGCTCTTCCATCTCCACCAAACACCAATAATGAAAGTTTAAGTGAGAGTGAATTGGGTTTATCACTAAGGTTACAACAGACTCATAACTTGTCTAGTGTTTCTACACATGTTGCTGCATCCCCTCCTAATAGAAAGGCTAGGGTTTCAGTCAGAGCAAGATGTGAAACAGCCACAATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAAATTGCAAAAGGAAATCCATGTCCAAGAGCCTATTATCGTTGCACTGTGGTACCAGGGTGCCCCGTTAGGAAACAGGTGCAAAGATGCATAGATGATATGTCCATACTAATTACAACATATGAAGGAACACATAATCATCCACTCCCTGTTGGTGCAACTGCTATGGCTTCAACAGCATCAACAAGTTCCTTTGTATTGTTGGATTCAAGCAACCCTATTTCTGATATTGGCACCTCTAGTTTCACTCAACCATCATCATTTCCATACAACAATAGCTTCCACTCATTAAACCCACCTTCCAATTTTAGGACCATAAACCATAATAATGACCCTTCCAAAGGGTTTGTTCTTGATCTCACCAATAATCTCAATGACCCTCTACATTTTCCTATTGGCATAAGGTCCTCCAATGCAACAAATGAACCTTGTTTTTCTTGGATGGAAAACAAGTACCAAAGTGATGGTAGTAGTGCAATAATGGACAATTTTCACAACCCTAGTACTAGTTATAGACCAGTAGTGGATCAAGATCATGAGCACAATGTTTCTGCAATTGCCTCAGATCCTAAGTTTAGGAATGCGGTTGCGGCAGCCATAACATCACTGATGAATAAAGAGAGTCATGGTGGTACTTCCTTTGGTACTAGGAGTGGCCAAAATGGTATCTCTAGTAGCAACAACAATTGGGTCTTAGATTCTCTTTCAAAAAATGGTAAGTCTACTTGA	1428	0.3768	MGKEEEEEFTKMEIDLSLKIDPDEHNEEEEEEAKVDERVEENDEVQEIARKENNEYVPEAIGGEIEDDASVVELSLQDNTKTKELSILQMEMENMKEENKVLRKVVEQTMKDYYDLQMKFSIIQENNKRKDHQISLSLEDIITTSNEGSSRIFEIFNNTKIHRALPSPPNTNNESLSESELGLSLRLQQTHNLSSVSTHVAASPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVVPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASTSSFVLLDSSNPISDIGTSSFTQPSSFPYNNSFHSLNPPSNFRTINHNNDPSKGFVLDLTNNLNDPLHFPIGIRSSNATNEPCFSWMENKYQSDGSSAIMDNFHNPSTSYRPVVDQDHEHNVSAIASDPKFRNAVAAAITSLMNKESHGGTSFGTRSGQNGISSSNNNWVLDSLSKNGKST*	476

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan1g0787	475	Pfam	WRKY DNA -binding domain	223	281	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lan1g0787	475	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	13	192	IPR044810	GO:0003700
Lan1g0787	475	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	199	469	IPR044810	GO:0003700
Lan1g0787	475	SMART	WRKY_cls	222	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lan1g0787	475	SUPERFAMILY	WRKY DNA-binding domain	215	283	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lan1g0787	475	Gene3D	WRKY domain	207	284	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lan1g0787	475	MobiDBLite	consensus disorder prediction	1	48	-	-
Lan1g0787	475	PANTHER	WRKY TRANSCRIPTION FACTOR 9-RELATED	13	192	-	-
Lan1g0787	475	PANTHER	WRKY TRANSCRIPTION FACTOR 9-RELATED	199	469	-	-
Lan1g0787	475	Coils	Coil	85	112	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g0787	Lan-Chr1	18505116	18508240	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g0787	88	331	WRKY Transcription Factor Family	AT1G68150	53.285	7.29e-85	264

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lan1g0787		WRKY	3.6e-24	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g0787	-		-	lang:109350732	870.152

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan12g0268	12	6404335	6407523	Lan1g0787	1	18505116	18508240	LSH

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