Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0779 ATGTCAGATGAGGAAGAATATCGTTGCTTTATAGGTGGCCTTGCATGGGCAACATCTGATAGGAAGTTAAAGGATGCATTTGATAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAACTCTCTGGGCGTTCTCGTGGTTTCGGATTTGTCACATTTGGTGAAAAGAAAGCAATGGAAGATGCTATTGATGCCATGAATGGGATGGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTTCCGAGACCGTGATCGTGGTCGTGACCGTGGTCGCGATCGCGATTATGGAGGTGGTCGAGGATCCAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCACTTTGCTAGAGAGTGCCCTAGTGAAGGGGAAAGAGGAGGAAGGTATGGTGGCAGGGAAAGTAAATATGGTGGAAGCAGTGCTGGCGGTCGCTATGGTCCTGATAGAAATGGAGATCGTTCGTCTGGTGGGCGCAACAGGGATGCTGGTAGTCGTGGAGAGTCTGGAAATGATCGCCATCATCGTGATCGTGCTGGTCCATATGAACGACGCTGA 606 0.4802 MSDEEEYRCFIGGLAWATSDRKLKDAFDKFGKLIEAKVVVDKLSGRSRGFGFVTFGEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSTRDDGDRFRDRDRGRDRGRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESKYGGSSAGGRYGPDRNGDRSSGGRNRDAGSRGESGNDRHHRDRAGPYERR* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0779 201 MobiDBLite consensus disorder prediction 168 201 - -
Lan1g0779 201 Gene3D - 1 118 IPR012677 -
Lan1g0779 201 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Lan1g0779 201 MobiDBLite consensus disorder prediction 76 201 - -
Lan1g0779 201 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Lan1g0779 201 PANTHER TRANSFORMER-2-RELATED 1 177 - -
Lan1g0779 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lan1g0779 201 MobiDBLite consensus disorder prediction 88 115 - -
Lan1g0779 201 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 177 - -
Lan1g0779 201 SUPERFAMILY Retrovirus zinc finger-like domains 105 142 IPR036875 GO:0003676|GO:0008270
Lan1g0779 201 Gene3D - 119 181 - -
Lan1g0779 201 MobiDBLite consensus disorder prediction 128 148 - -
Lan1g0779 201 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lan1g0779 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lan1g0779 201 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lan1g0779 201 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0779 Lan-Chr1 18263024 18268548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0779 10 93 Eukaryotic Initiation Factors Gene Family AT1G22760 33.333 2.98e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0779 - - gmx:100815224 281.182