Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0777 ATGGTGAACGTTCCAAAGACAAGGAAGACTTACTGCAAGAACAAGGAATGCAAGAAGCATACACTGCACAAGGTTACCCAATACAAGAAGGGTAAGGATAGCACTGCTGCTCAGGGAAAGCGCCGTTACGACCGCAAACAGTCCGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAGAAGGCAAAAACAACCAAGAAGATTGTCTTGAGGTTGCAGTGCCAGGGTTGCAAACATGTCTCCCAACGTGCTATCAAGAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACCTCTCTGTTCTAG 318 0.4811 MVNVPKTRKTYCKNKECKKHTLHKVTQYKKGKDSTAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQRAIKRCKHFEIGGDKKGKGTSLF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0777 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lan1g0777 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lan1g0777 105 MobiDBLite consensus disorder prediction 28 62 - -
Lan1g0777 105 Gene3D - 1 105 - -
Lan1g0777 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lan1g0777 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Lan1g0777 105 MobiDBLite consensus disorder prediction 28 48 - -
Lan1g0777 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0777 Lan-Chr1 18254483 18256152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0777 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 93.333 2.24e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0777 K02929 - ini:109148838 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0777 1 18254483 18256152 Lan4g0756 4 9705746 9706752 PCT
Lan1g0777 1 18254483 18256152 Lan19g1052 19 17710565 17712432 PCT
Lan4g0756 4 9705746 9706752 Lan1g0777 1 18254483 18256152 PCT
Lan19g1052 19 17710565 17712432 Lan1g0777 1 18254483 18256152 PCT