Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0725 ATGGAGAAGCACAAGTGCAAGCTTTGTTTCAGAAATTTTTCCAATGGAAGAGCCTTGGGAGGTCACATGAGGTCTCATATGATGAACCTACATGTCCCTCCTAAATTCAACGAGTCATTATCATCACCATCACCACCATCAGTTCGACTCAGTTTCGAAGCCGAGTCAGCATCCTCTCCATCTTCATCATCGTCCGAAGATAACAAGAATCTTTCCTATGCCTTAAGAGAGAATCCAAAGCGAAGCTTGCGACTTTCAGATCCTGAGTTTGCAGACACAGGCTCCGTGATCCTTCAAGATAGAGAGAGTGAAACTGAGTCATCGAGAAACCCAACTCGGAGGCGATCTAAAAGAGCATGGAAACTCGGTCCCCTCGATCAACAACAATTAAGTAAGAATATCAAGTTTAGTATGCATTTTAACAAGAATGAATCTTTGAGTTCAGTTTCTGACACAACCACAGAGGAAGATGTCGCTTTTTGCCTCATGATGCTGTCTCGTGACAAGTGGAAGAGACAACAAGAATTGTACGAGGTAGAAGAACCAGAAGAGGAAGATGATGATGACGAAGATGAAGAGGAAGATGAAGAAGAGAATTACGAATCGGATGAAGAAATGAAATCATCGAAGACAATATTAACTAGAGTACGAGGTAAATACAAATGCGAAACATGCAACAAGGTGTTTCGATCTTATCAAGCATTGGGTGGACATAGAGCGAGTCATAAGAAGATCAAGACCATCTTAGAGGAACAACCAAAATCTGAGCATCATATTAACACTAGTAATATTAATGGAGCTAAGAAAATTCATGAATGTCCGGTTTGCTTTCGGATTTTTGCTTCAGGTCAAGCCCTTGGTGGGCATAAGAGAACACATGTGATTGGTTCTACCGCAACCACAACCGCGACCACAATAACAATCCCTGTTCCAAATTTCGCTAAGTTCGGAGATAGTTTCATAGATCTTAACCTCCCAGCCCCCATGGATGATGTTGAAATCGAAGCCTCTGCAGTTTCAGATGCAGAATTTGTCAAATCACATTAA 1047 0.4164 MEKHKCKLCFRNFSNGRALGGHMRSHMMNLHVPPKFNESLSSPSPPSVRLSFEAESASSPSSSSSEDNKNLSYALRENPKRSLRLSDPEFADTGSVILQDRESETESSRNPTRRRSKRAWKLGPLDQQQLSKNIKFSMHFNKNESLSSVSDTTTEEDVAFCLMMLSRDKWKRQQELYEVEEPEEEDDDDEDEEEDEEENYESDEEMKSSKTILTRVRGKYKCETCNKVFRSYQALGGHRASHKKIKTILEEQPKSEHHINTSNINGAKKIHECPVCFRIFASGQALGGHKRTHVIGSTATTTATTITIPVPNFAKFGDSFIDLNLPAPMDDVEIEASAVSDAEFVKSH* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0725 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 293 IPR013087 -
Lan1g0725 348 MobiDBLite consensus disorder prediction 35 70 - -
Lan1g0725 348 MobiDBLite consensus disorder prediction 179 202 - -
Lan1g0725 348 SUPERFAMILY beta-beta-alpha zinc fingers 268 294 IPR036236 -
Lan1g0725 348 Gene3D Classic Zinc Finger 217 293 - -
Lan1g0725 348 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Lan1g0725 348 MobiDBLite consensus disorder prediction 176 208 - -
Lan1g0725 348 MobiDBLite consensus disorder prediction 83 124 - -
Lan1g0725 348 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Lan1g0725 348 Pfam C2H2-type zinc finger 220 244 - -
Lan1g0725 348 Pfam C2H2-type zinc finger 4 27 - -
Lan1g0725 348 Pfam C2H2-type zinc finger 271 293 - -
Lan1g0725 348 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 346 IPR044303 GO:0006355
Lan1g0725 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Lan1g0725 348 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 346 - -
Lan1g0725 348 SMART c2h2final6 4 26 IPR013087 -
Lan1g0725 348 SMART c2h2final6 220 242 IPR013087 -
Lan1g0725 348 SMART c2h2final6 271 293 IPR013087 -
Lan1g0725 348 MobiDBLite consensus disorder prediction 34 70 - -
Lan1g0725 348 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lan1g0725 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Lan1g0725 348 SUPERFAMILY beta-beta-alpha zinc fingers 3 242 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0725 Lan-Chr1 16859752 16861207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0725 1 334 C2H2 Transcription Factor Family AT3G60580 43.605 1.31e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g0725 zf-C2H2_6 7.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0725 - - zju:107424180 338.961