Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0720 ATGGAGTCAAGGATTTGCATGAACGTGGCGTGTGCAATCACAACGTCGATTCGGTGGCGCAGAGGTTGGGCATTGCGATCCGGTGAATTCGCTGATCTATGTGATAAGTGCGGTTCCGCTTATGAACAATCAACATATTGTGATGTGTTTCATTCAAACGACTCTGGTTGGAGAGAGTGCACTTTTTGTGGAAAGCGACTCCATTGTGGATGTGTTGTCTCTATGTCTCAGTTTGAGTTACTAGATACCGGTGGTGTAAGCTGTATAAATTGCGCAAGGAATTTAGGAATTCAACCTGTTGCAACTACTGGAAAGCCTAACGAGTCTGAGACATCAAAGGGAAAAAATGTCAGTGAAAAGAACTTCATATCTCTGGCTAACCAATTAAATGTCAGGGGTATGCAAATAGGGCATTATGCATCGAACGATGGGCTGAGATGGTGGCTCAAACCACATAATTTTGACACAAGTGGGACTTCTGCAGAAATAATAGTGGAAGAAGTTCCACCTTCGATTGAAAATATTGGAAACACTTCGATATCACAATTTCCTCCTGAGTCGAATGGATCATCTAAGGCTGCCAAAGAAGATAACAATACGTCAGACATGGAAATGCAAGATACATATGAACCATTGACACAGACAACTATGACTCATGCTGCTCCATTAGGACACTCAAATCCCTTTCAAACAGCCATTACTGATGAAAGAGAACAAAGTAAAACATCATCTCCACTTCTAGCAGGGTCTAGGTCTCGCCAGCTATCACCTAAGCCCCTTAGGTCAACTCTTACCGCAGGCTTAGAAGAAAATATAAGCATGGCATCCCAGACTCGTGTAGCAAGGCCTCCTGCTGAAGGACGGGGAAGGAATCAGTTACTTCCCCGTTATTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCTGGAGGTTCAAATTCCACTGTCGTGCCACTCTTTGAGAAGACGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGATTTTACCAAAAGCTTGTGCAGAAGCCTATTTTCCTCCCATCTCTCAACCAGATGGTCTTCCTCTACGAATCCATGATGTGAAAGGAAAAGAATGGGTGTTCCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACTCCCTGCATCCAGTCTATGCAATTGCAAGCTGGGGATACTGTAACATTCAGCCGTATGGACCCTGAGGGTAAACTTGTAATGGGGTTTAGGAAGGGAATATATTCTGCAGCAATACAGGACACTCAACCGTCTAGTATGCCAAATGGTTCTCGTTCAAGTGAAACTTCCTATTCTGGTCTTTATGGGAATTTATCTATATTAAGTGGTTCTGGAAATCTTCGGTCACAGAAGGAGAATTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAACTTGCATAGTATTGAGATGCCCGGAAGCAGGAAAAGAGAGGGGATGAGTTTGCCACCTATGGTGGTTCCTGAGAAGAAGAGAGCTCGGAATATAGGGTCAAAAAGTAAGAGGTTGCTTATTGAAAGCCAGGATGCAATGGAGCTGATACTTACTTGGGAAGAGGCTCAGGACTTGCTACGTCCACCACCAACAATTAAGCCAAGCATTGTAATGATTGAGGATCATGTAATTGAAGAGTATGAAGAACCTCCTGTCTTTGGTAAGACGAGTATATGTGTATCCCGCTCAACTGGGATAAATGAGCAGTGGACACAATGTGATAGGTGCTCAAAATGGCGGAAGTTGCCGATTGATGTACTTGTTCCTCATAATTGGACATGCACGGAGAATTTATGGGATCAGAATAGGTCTTCATGTTCTGCTCCTAACGAATTGAACCAAAGGGAACTGGATAATCTTCTGAGACTGAACAAGGAATTCGATAAACTAAAAGTGGCAGCAAGCCCCAATCCGCTGGAACATAAATCTTCTGGACTGGATGCTTTGGTGAACACTTCAATACTTGGAGATGATGCAGGTGACCCTGGCAGCACGCAGGTGGCTACCACTACAAAACACCCTCGGCATAGACCTGGGTGCTCCTGCATTGTTTGTATCCAACCACCAAGTGGGAAGGGTAAACACAAACCTACATGCACCTGTGATGTCTGCATGGCAGTTAAACGTCGGTTTAAAACCCTGATGATGCGTAAGATGAAGCTTCAATCTGAACATGAAACAGAATCAGACAGCATCTCGCATTTACCTCCAGTTGATGATTCGGAGAATGAAGCAAGGGTGCCTGATGAGTTGGATTCAACAAGTCAAGACCACGCGGCTGAAGCTGCCAAGGGACAACTAGACTTGAATTTCCAACCTGGTGGAGAAGACGTGCAAGCCGGGGCAAACAATGTGTGCATGATGAGTCTTCTTGAAGAAGCAAATCTCCCGCCGGAGACGAACATGAAGAAAAATGGTATTACTAGCTTGACATTGGAGGAAAAAACTAATTCCGCATCAAATGTACAGGCACAAACACCCAATGAGAGTGAGGGAAGACATAATGATGATCAATGTACTGCTTCTGCTGCTCATGAGCATGAAAGCAGTCCTGAAGAAAACAGTGAGCAAGATAAAGACCAGAAGAATTCACTCTCTTGA 2664 0.4396 MESRICMNVACAITTSIRWRRGWALRSGEFADLCDKCGSAYEQSTYCDVFHSNDSGWRECTFCGKRLHCGCVVSMSQFELLDTGGVSCINCARNLGIQPVATTGKPNESETSKGKNVSEKNFISLANQLNVRGMQIGHYASNDGLRWWLKPHNFDTSGTSAEIIVEEVPPSIENIGNTSISQFPPESNGSSKAAKEDNNTSDMEMQDTYEPLTQTTMTHAAPLGHSNPFQTAITDEREQSKTSSPLLAGSRSRQLSPKPLRSTLTAGLEENISMASQTRVARPPAEGRGRNQLLPRYWPRITDQELQQISGGSNSTVVPLFEKTLSASDAGRIGRLILPKACAEAYFPPISQPDGLPLRIHDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKGIYSAAIQDTQPSSMPNGSRSSETSYSGLYGNLSILSGSGNLRSQKENSETHLNVLSKKWNSAGGDMNLHSIEMPGSRKREGMSLPPMVVPEKKRARNIGSKSKRLLIESQDAMELILTWEEAQDLLRPPPTIKPSIVMIEDHVIEEYEEPPVFGKTSICVSRSTGINEQWTQCDRCSKWRKLPIDVLVPHNWTCTENLWDQNRSSCSAPNELNQRELDNLLRLNKEFDKLKVAASPNPLEHKSSGLDALVNTSILGDDAGDPGSTQVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCDVCMAVKRRFKTLMMRKMKLQSEHETESDSISHLPPVDDSENEARVPDELDSTSQDHAAEAAKGQLDLNFQPGGEDVQAGANNVCMMSLLEEANLPPETNMKKNGITSLTLEEKTNSASNVQAQTPNESEGRHNDDQCTASAAHEHESSPEENSEQDKDQKNSLS* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0720 887 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Lan1g0720 887 MobiDBLite consensus disorder prediction 740 778 - -
Lan1g0720 887 Gene3D - 588 644 - -
Lan1g0720 887 MobiDBLite consensus disorder prediction 175 203 - -
Lan1g0720 887 MobiDBLite consensus disorder prediction 235 291 - -
Lan1g0720 887 CDD B3_DNA 319 420 IPR003340 GO:0003677
Lan1g0720 887 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Lan1g0720 887 SMART B3_2 321 421 IPR003340 GO:0003677
Lan1g0720 887 MobiDBLite consensus disorder prediction 175 196 - -
Lan1g0720 887 MobiDBLite consensus disorder prediction 740 781 - -
Lan1g0720 887 Gene3D - 299 422 IPR015300 -
Lan1g0720 887 ProSiteProfiles Zinc finger CW-type profile. 585 635 IPR011124 GO:0008270
Lan1g0720 887 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 838 - -
Lan1g0720 887 Pfam CW-type Zinc Finger 590 632 IPR011124 GO:0008270
Lan1g0720 887 MobiDBLite consensus disorder prediction 851 887 - -
Lan1g0720 887 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Lan1g0720 887 MobiDBLite consensus disorder prediction 235 278 - -
Lan1g0720 887 MobiDBLite consensus disorder prediction 834 887 - -
Lan1g0720 887 MobiDBLite consensus disorder prediction 677 698 - -
Lan1g0720 887 MobiDBLite consensus disorder prediction 834 850 - -
Lan1g0720 887 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0720 Lan-Chr1 16471915 16480020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0720 1 867 B3 DNA Binding Superfamily AT4G32010 47.086 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan1g0720 B3 7.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0720 - - gmx:100778833 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0176 12 2555414 2563782 Lan1g0720 1 16471915 16480020 LSH