Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0627 ATGGATGTTGCTGAGGTTGAAGAGAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCGCTTTCAGTAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCCGGAATTCAGGCATTATGTTCATTGCATGTAGCTCTAGAGAAGGCCAAGAATGTTCTTCTGCACTGCTCAGATTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGTTAAATGCGCTCTTGAAGATGGTCTTAAACGCGTGGAAGATATTGTTCCACAATCTATTGGATTTCAGATTCAGGATATTTTGGATGAACTTGTGAGTGTGGTATTTGCACTTGACCCATCGGAGAAGCAAGTTGGCGATGATTTAATTGCAATGCTTCAACAGGGGAGAAAGTTCAACTACTGCAATGACAGTAATGAGCTCGAATCATTTCACCAGGCTACCATTAGACTTGGAATTACATCTTTCAGAGCAGCTCTTACTGAAAGAAGGGCCCTCAAGAAACTCATAGAAAGGGCTCAGGCTGAGGAAGACAAGCGGAAGGAATCAATCGTTGCATATCTTTTACATCTTACGAGGAAATACTCGAAGCTATTTAGAAGTGAGGTCTTGGATGACAATGACTCTCAGGGTTCTGGACCTTGTTCTCCAATTGTTCAGAGATCTATTGAGGATGGTGTTTCTGTTGGTCATTATCAGGCCTTTGACAGACAGCTTTCGAAACTTAGTTCCTTTAATTTTAGGCCAAATAATAGGATATCAGGTCAGATGCCCATTCCACCTGAAGAGCTAACGTGTCCAATATCTTTGCAACTTATGTATGATCCTATTATCATTGGTTCTGGGCAAACATTTGAAAGGGTTTGCATCGAGAAATGGTTCAGTGATGGACACAATACCTGCCCAAAGACTCAACAGCAACTTTCTCACCTTTGTTTAACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACATAATGGCGTCCCTATTCCTGAAAGTCCTCCCGAGTCCCTTGATATTAACTACTGGAGATTGGCATTATCAGAGTCTGAATCTACAAATTCAAGATCTGTAAACAGTGTCAGCTCTTGCAAATCAAAAGGTGTCAAAGTAGTTTCTTTAGAAGAGAATGGTATCTTAGAGGAAATAGAGCGAAATGGAACTGAAAGTGTGTCTACAGAAGAGGAAGATGCTGACCAGTATTTACATTTTCTGAAAGTTTTGACTGAGGGGAACAATTGGAAGTGGAAATGTGAAGTGGTAGAACGATTAAGGCTGATGCTGAGAGATGACGAGGAAACCAGGAATTTTATGGGGGCTAATGGGTTTGTTGAAGCCCTTTTGCTGTTTTTACAATTCGCTTTGCATGAAGGGAACTTTATGGCTCTGGAAAGTGGAGCAATGGCCCTATTCAACCTGGCTGTAAACAACAACAGAAATAAGGAAATTATGTTATCCTCAGGAGTATTGCCATTGTTGGAGGAGATGATTTCTAACACCAGTTGTTATGGTTGTGCAACTGCCCTGTATCTGAATCTCTCTTGCCTTGACGAAGCAAAGCCTATGATTGGTATGAGTCAGGCTGTTCAGTTCCTAACCCAGCTTCTTCAAGATGACTCCGGTGTTCAATGCAAGCAAGATTCTCTTCATGCTCTTTATAATCTTTCTACCGTGCCCTCCAATATTCCACACCTCCTCTCATCAGGCATCATTAATGGCCTACAATCCCTTCTTGTAGGTCAGAGTGATTGCTTGTGGACAGAAAAATGTGTAGCTGTTTTGATAAACTTGGCTACTTCTCAAGTCGGAAGAGAAGAAATGGTTTCAAATCCTGGACTCATTAGTGCATTGGCTTCGATATTGGACATTGGTGTTCTCCTAGAACAGGAGCAAGCTGTGTCTTGTCTCCTAATATTGTGTACCAGAAGCGAGAAATGTTGCGAAATGGTCTTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCAAAAGGGAGAGAAAGAGCTCAGAAACTCTTGATGCTATTCCGAGAGCAACGACGACGAGAGCATTCACAAGATGAGACACAACAGTGTACTCCTGAAACTACTGATTTGTCTATGCCACCTGCGGAAGCGAAACCGCAATGCAAGTCTATGTCTAGAAAGAAGCCAGGAAAAGCTTTTAGCTTTTTCTGGAAAACCAAAAGCTATTCGCTCTCCCAGTGTTAA 2295 0.417 MDVAEVEENLFAASDAKLHGEMCKALSVIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKAKNVLLHCSDCSKLYLAITGDSVLLKFEKVKCALEDGLKRVEDIVPQSIGFQIQDILDELVSVVFALDPSEKQVGDDLIAMLQQGRKFNYCNDSNELESFHQATIRLGITSFRAALTERRALKKLIERAQAEEDKRKESIVAYLLHLTRKYSKLFRSEVLDDNDSQGSGPCSPIVQRSIEDGVSVGHYQAFDRQLSKLSSFNFRPNNRISGQMPIPPEELTCPISLQLMYDPIIIGSGQTFERVCIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLVASWCEHNGVPIPESPPESLDINYWRLALSESESTNSRSVNSVSSCKSKGVKVVSLEENGILEEIERNGTESVSTEEEDADQYLHFLKVLTEGNNWKWKCEVVERLRLMLRDDEETRNFMGANGFVEALLLFLQFALHEGNFMALESGAMALFNLAVNNNRNKEIMLSSGVLPLLEEMISNTSCYGCATALYLNLSCLDEAKPMIGMSQAVQFLTQLLQDDSGVQCKQDSLHALYNLSTVPSNIPHLLSSGIINGLQSLLVGQSDCLWTEKCVAVLINLATSQVGREEMVSNPGLISALASILDIGVLLEQEQAVSCLLILCTRSEKCCEMVLQEGVIPALVSISVNGTSKGRERAQKLLMLFREQRRREHSQDETQQCTPETTDLSMPPAEAKPQCKSMSRKKPGKAFSFFWKTKSYSLSQC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0627 764 Gene3D - 404 721 IPR011989 -
Lan1g0627 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 756 - -
Lan1g0627 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lan1g0627 764 CDD RING-Ubox_PUB 285 325 IPR045210 -
Lan1g0627 764 PANTHER U BOX DOMAIN-CONTAINING 1 756 - -
Lan1g0627 764 SUPERFAMILY ARM repeat 426 706 IPR016024 -
Lan1g0627 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Lan1g0627 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lan1g0627 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lan1g0627 764 MobiDBLite consensus disorder prediction 708 746 - -
Lan1g0627 764 SUPERFAMILY RING/U-box 272 355 - -
Lan1g0627 764 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0627 Lan-Chr1 10664166 10669182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0627 1 761 U-box Gene Family AT1G24330 63.918 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0627 - - gmx:100794099 1210.67