Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0606 ATGATGCAAATTTCATCCACCAAGTACATGCCTGAATTTGGAATTGAGGATCCAACCTTCTTTCATCAATACGCAATGGATTCTTTTGCATACCAAGTTGATGATGTTGACTTCAAACCTTTTTCTGCAGCCACAGAGAGCAACAATTCCTCTCACAATTACTTTCACTACGAAACCACAGAAAACTCATTCCCTGAAGACCACTGTGTTGTTTCCCCAGCAAGACCAAGCAAGCAACTGAAGACTAATTGGAATGATTACAACAATGACTTGAAGGCTTCTAATTTCTCTTCATCCTCACAAATCATTTCTTTTGAGCACTCCAATACTTCTTCAGTTGCTTCCCAGCATTATCACAACCATGACTACGAGAACAAAAGTTTTCAAAATTATGATAAACAAGCAAATAAGACTGCTAACAGCACTATGACTATGAGGAACACAAACCAAGCTCAAGATCACGTATTATCTGAAAGAAAAAGAAGGGAAAAGCTCAACCAGAGGTTCGTTGCTCTTTCCGCCATCGTTCCTGGACTCAAGAAGATGGACAAGGCTACTGTGTTGGGAGATGCTATAAAGTATCTGAAACAACTACAAGAAAGGGTGAAGACACTGGAGAAACAAGCAAGTGAAGAAAGAGTTGAATCAGCAGTGGTAGTGAAGAAATCTATTATCTTCGCAGATGAAGATAATAGCTCCCCTTTAGATGAAAACTCTAACCAAACAATCCCTGAAATGGAAGCAAGAGTTTGTGGTATAGAGGTACTCATAAGAATTCATTGTAACAAACACAATGGTAGATCAGCTACAATACTCAATGAGTTGGAAAAGTATCATCTCACTATTCAGAGTACCAGCTTTGTGCCCTTTGGGAATAACACTATTGACATAACCATTGTTGCTCAGATGAACAAGGAACACAGCGTGACAGCAAAAGATCTCATAAAATACTTAAGAAAGTCTCTGAAGAAGTTAATTTGA 981 0.3853 MMQISSTKYMPEFGIEDPTFFHQYAMDSFAYQVDDVDFKPFSAATESNNSSHNYFHYETTENSFPEDHCVVSPARPSKQLKTNWNDYNNDLKASNFSSSSQIISFEHSNTSSVASQHYHNHDYENKSFQNYDKQANKTANSTMTMRNTNQAQDHVLSERKRREKLNQRFVALSAIVPGLKKMDKATVLGDAIKYLKQLQERVKTLEKQASEERVESAVVVKKSIIFADEDNSSPLDENSNQTIPEMEARVCGIEVLIRIHCNKHNGRSATILNELEKYHLTIQSTSFVPFGNNTIDITIVAQMNKEHSVTAKDLIKYLRKSLKKLI* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0606 326 PANTHER BHLH TRANSCRIPTION FACTOR 1 113 - -
Lan1g0606 326 PANTHER BHLH TRANSCRIPTION FACTOR 122 324 - -
Lan1g0606 326 Gene3D - 145 212 IPR036638 GO:0046983
Lan1g0606 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 216 IPR036638 GO:0046983
Lan1g0606 326 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 122 324 - -
Lan1g0606 326 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 113 - -
Lan1g0606 326 Coils Coil 188 215 - -
Lan1g0606 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Lan1g0606 326 CDD bHLH_AtNAI1_like 151 223 - -
Lan1g0606 326 Pfam Helix-loop-helix DNA-binding domain 153 199 IPR011598 GO:0046983
Lan1g0606 326 SMART finulus 155 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0606 Lan-Chr1 9471448 9474508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0606 2 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.249 1.72e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g0606 HLH 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0606 - - gmx:100785572 348.591