Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0587 ATGGCGGGTGTTTCTCTGAAATGCGGAGACTGTGGAGCTCTGTTGAAATCTGTAGAAGAAGCACAAGAGCACGCTGAACTCACTTCTCACTCCAACTTCTCCGAATCCACTGAACCTGTTCTCAATCTCGTTTGCACCGCTTGCTCCAAACCATGCCGATCTAAAACCGAGAGTGATTTGCATACGAAGAGAACTGGGCATACAGAATTTGTTGATAAGACCTCGGAAGCAACAAAACCAATAAGTTTAGAGGCTCCAAAGGTGGGTGCAACTGCAGAAGACTCTGTTACTGCAACCACTAACCAAGATGAAGAAATGGTTGTTCCAGAAGTTGACAAAAAGATACTCGAGGAACTTGAATCAATGGGTTTTTCAGCAGCACGAGCAACGCGTGCACTTCATTATTCTGGTAATGCTGGCCTTGAAGCGGCTGTAACTTGGATAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCTTTGGTACCTGCTAACACAAAAGTCGAGGCTCCCAAACCTTCTCTTACCCCAGAAGAACTTAAGGCCAAACAACAAGAACTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAACGGAGAGGGAAAAAGAGAAGGAGAGAATTCGCATCGGCAAGGAGCTGCTGGAAGCAAAGAGGATTGAAGAAGATAATGAGAGAAAACGTATATTGGCTTTGAGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAGGACAAGGCAGAAAGAAGGCGAAGACTTGGGTTGCCTCCAGAGGAGCCTTCAGTATCCAAACCTTCACCTGTTGTCGAGGAGAAAAAGAGTTTTCTCCCAGTAAGGCCTGCCACAAAAGCTGAACAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTGAAGAAAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAACCCTGATGAGGAAAAATTCAGGAAAATTCGACTTACTAACCAATCTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGTGGAATTGAGTTCCTGGAAATTTGCGGGTTTGAGAAGATCGACGGTGGTGAGTTTTTGTTCTTGCCTAGGGACAAGGTTGACATGGCAGTCCTGAATTCAGCTGGGTCTGAACTAGATTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1233 0.4501 MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEPVLNLVCTACSKPCRSKTESDLHTKRTGHTEFVDKTSEATKPISLEAPKVGATAEDSVTATTNQDEEMVVPEVDKKILEELESMGFSAARATRALHYSGNAGLEAAVTWIVEHENDPDIDQMPLVPANTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKRTEREKEKERIRIGKELLEAKRIEEDNERKRILALRKAEKEEERRAREKIKQKLEEDKAERRRRLGLPPEEPSVSKPSPVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNPDEEKFRKIRLTNQSFQERVGALKGGIEFLEICGFEKIDGGEFLFLPRDKVDMAVLNSAGSELDSAIKNPFFGVL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0587 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lan1g0587 410 Coils Coil 181 213 - -
Lan1g0587 410 Pfam UBA/TS-N domain 113 148 IPR015940 -
Lan1g0587 410 MobiDBLite consensus disorder prediction 175 210 - -
Lan1g0587 410 CDD PUB_UBA_plant 304 410 - -
Lan1g0587 410 SUPERFAMILY UBA-like 101 164 IPR009060 GO:0005515
Lan1g0587 410 SMART uba_6 112 150 IPR015940 -
Lan1g0587 410 MobiDBLite consensus disorder prediction 254 270 - -
Lan1g0587 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lan1g0587 410 SUPERFAMILY PUG domain-like 292 406 IPR036339 -
Lan1g0587 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lan1g0587 410 Pfam PUB domain 317 387 IPR018997 -
Lan1g0587 410 MobiDBLite consensus disorder prediction 254 294 - -
Lan1g0587 410 SMART PGNneu 320 383 - -
Lan1g0587 410 MobiDBLite consensus disorder prediction 168 210 - -
Lan1g0587 410 Gene3D - 298 400 - -
Lan1g0587 410 Gene3D - 112 158 - -
Lan1g0587 410 Coils Coil 224 261 - -
Lan1g0587 410 CDD UBA_PUB_plant 110 158 - -
Lan1g0587 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0587 Lan-Chr1 8446668 8454193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0587 93 410 C2H2 Transcription Factor Family AT1G04850 77.882 3.82e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0587 K24348 - gmx:100794687 658.292