Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0578 ATGGTTCACCCAAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTGCTGAGATTCGCCATCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCAGAAGAAGCAGCTAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTCCCAATTTCTGATAAACCAAATGAAACTCATCAAAAATCTTCTACAACTACTAGTTCCTCATCATCATCTTCATCTTCTTCTTCTAAATCATTATCTGAAATTCTAAGTGCAAAGCTTAGAAAATGTTGCAAATCACCATCACCTTCACTCACTTGCCTAAGGCTAGACAATGAAAATTCTCATATTGGTGTGTGGCAAAAAAGAGCAGGTTCTCATTCTGACTCAAATTGGATCATGATGGTTGAATTAGAAAGGAAAAATGTAACACTAGAAGCAGCAAATTCTGATGATTCAGAATTACAAGTTCAACAACCTCAAATGCAAGAGAAGGTAATAAAACCAGAGGAAAATAATAATAATAATAATAATACTAATAATAATAATAATACTAATAATAATAATAATAATAATAATAATAATAATAATAATGAAGGGTTAGATGAGGAGCAAAAAATTGCATTGCAAATGATAGAGGAACTTCTTAATAGGAATTAA 681 0.3319 MVHPKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPISDKPNETHQKSSTTTSSSSSSSSSSSKSLSEILSAKLRKCCKSPSPSLTCLRLDNENSHIGVWQKRAGSHSDSNWIMMVELERKNVTLEAANSDDSELQVQQPQMQEKVIKPEENNNNNNNTNNNNNTNNNNNNNNNNNNNEGLDEEQKIALQMIEELLNRN* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0578 226 MobiDBLite consensus disorder prediction 61 90 - -
Lan1g0578 226 MobiDBLite consensus disorder prediction 158 207 - -
Lan1g0578 226 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lan1g0578 226 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lan1g0578 226 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lan1g0578 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 226 - -
Lan1g0578 226 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 226 - -
Lan1g0578 226 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lan1g0578 226 Coils Coil 205 225 - -
Lan1g0578 226 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lan1g0578 226 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lan1g0578 226 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lan1g0578 226 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0578 Lan-Chr1 7813346 7814962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0578 1 226 AP2-EREBP Transcription Factor Family AT1G15360 59.031 1.62e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g0578 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0578 - - gmx:100785898 244.588