Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0544 ATGTCAGAAGGATATGATGAGATTCAAGACAATGAGAGGAATGAGGAACAAGGTGGGGAAACTTCATTGAGGTCTTCACATAAATCTTCATCCTTTGACTTGAATGAAGAAGCTAATAGTGAAGAAAACAATGATAACGATGAGGCATGTAATGAACTAAAAGGAGATGAAGAAAATGATGAGAAAGTAAAGGAGAATGAAGGGACTTCAAGTAATAGAAGTATGACAAGTTCAAAAGAAATAGGAAATGAAAGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTAGACTCCGTTGGACTCATGATCTTCATCTCTCTTTTGTGCATGCGATTGAAAGGCTTGGTGGTCAAGAGAGAGCAACTCCCAAGTTGGTCCTTCAGCTAATGAATGTGAGAGGTCTCAGCATTGCTCATGTGAAGAGTCATTTGCAGATGTACCGAAGCAAGAAACTTGACGAGACTGGGCAAGTATTAAGTCAATACAGATCAGCCCATAATCACGTAGGTCGTATTTCCCATGTTTCTCATCAATCCATGAGTCCTCATCAACATTTCAAGATGGGAAATGGTGGAATCATTCTAGCAACTCATTCCAAAGAGCATAACAATTTCCAGAGTCTCCTCCAGCCCTCCTCCATATCACATTCACATTCAAAGGCCACTGATTCAAGGCACCAGCAATGGTACTTGAATAATCATCAAACCTTTACAACACCAAGTTACATAAGCAACGAAGTTATCCCGTCAACAAGCTTACAAACTCAACGAAGATCAATAGCTTCAAACCAAATTCAACTAATTGATACAGGAAGCAGAATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAAGTGGCCTCCATTACAAATTATGAACAACAATCATGAGTGGAAGAAAATGTTACCTACCAATGTTAATGCTAATACTATGTCACAATCTGTTGTACAACAATTTGGCACTACTACTTCATCTCTTAGACCATCTGATCTTTTGAGCTTTGGAAACAACACAAGATTAATCAAAGAACATCTATCAAACTCGGATGAGCCTTTCAATTATTCCACTAGCTTAAAGCTTGGATTTGATCCCCCATTTCGGATTAAGTTGAATCAAAAAAAGTTGCAGAATGATAAGCAATGGGTGCCAGATTTGCATCTAGGTCTGAGTCAGAAAGATGGCAAGGCTGATCATTGCAGAGAAACCCAAGAAATCAACACTAAACTTTCACTTTCTTAG 1251 0.3877 MSEGYDEIQDNERNEEQGGETSLRSSHKSSSFDLNEEANSEENNDNDEACNELKGDEENDEKVKENEGTSSNRSMTSSKEIGNERRGGVRQYVRSKMPRLRWTHDLHLSFVHAIERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDETGQVLSQYRSAHNHVGRISHVSHQSMSPHQHFKMGNGGIILATHSKEHNNFQSLLQPSSISHSHSKATDSRHQQWYLNNHQTFTTPSYISNEVIPSTSLQTQRRSIASNQIQLIDTGSRIAPMRPSQFLEEKKWPPLQIMNNNHEWKKMLPTNVNANTMSQSVVQQFGTTTSSLRPSDLLSFGNNTRLIKEHLSNSDEPFNYSTSLKLGFDPPFRIKLNQKKLQNDKQWVPDLHLGLSQKDGKADHCRETQEINTKLSLS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0544 416 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 416 - -
Lan1g0544 416 Pfam Myb-like DNA-binding domain 100 150 IPR001005 -
Lan1g0544 416 Coils Coil 39 59 - -
Lan1g0544 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 154 IPR017930 -
Lan1g0544 416 Gene3D - 97 154 - -
Lan1g0544 416 MobiDBLite consensus disorder prediction 47 68 - -
Lan1g0544 416 MobiDBLite consensus disorder prediction 1 91 - -
Lan1g0544 416 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 416 IPR044848 GO:0003700
Lan1g0544 416 MobiDBLite consensus disorder prediction 1 22 - -
Lan1g0544 416 SUPERFAMILY Homeodomain-like 96 152 IPR009057 -
Lan1g0544 416 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 153 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0544 Lan-Chr1 6982707 6996533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0544 89 166 G2-like Transcription Factor Family AT2G42660 69.880 4.67e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan1g0544 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0544 - - gmx:100808625 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1750 1 31826682 31832644 Lan1g0544 1 6982707 6996533 LSH