Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0529 ATGGATGAAGCTCAGGGAATTCCGGGTTCCCTGCCGCCTTTCCTGGCGAAGACTTACGAGATGGTCGATGATCCTTCATCAGATTCAATTGTTTCCTGGAGTGCCAATAGTAAAAGTTTCATTGTGTGGAATCCTCTGGAGTTCTCGAGGGATTTGCTGCCGAAATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAATACATATGGTTTTAGAAAAGTTGACCCCGAACAATGGGAATTTGCGAATGACTATTTTGTGAGAGGGCAACCACATCATATGAAGAATATCCATAGAAGAAAGCCAGTGCATAGCCACTCTTTACAAAATCTCCAAACACATGTTCCGTTAATGGAATCAGAAAGACAGAGCTTAAAAAATGAGATAGATAAGCTTAAACAAGATAAAGAACTACTTCTTATGGAATTACGAAGATATGAACATGAGTTACAAACTTATGAGATACAATTACATTGCTCAAAAGATCATCTGGGAAAATTGGAACAGGCGCAACAAAAGATGGTCTCTTTTGTTTCTGAAGTATTGCAGAAACCTGGGAATGCCTTAAATCTCTTGTCACTAACAGAATCCGTTGATAGAAAACGAAGAGTGCCAAGAAGTAGCTACTTTAGTGATGAGGCTAGCATGGAAGATGCCGTTGAAACTTCCCGAATCAGAGAAAATGCAGAAAGTACCTCTAGTTTGGCATTAAACATGGAGCGCTTGGATCAACTTGAGTCATCCTTGGTAGTTTGGGAGAATATTGCACATGTGGTTGGTGATACCTTCGTTCATGTTCATTCTAACATGGATATTGATGAATCTACAATTTGTGCTGTTAGTCCATCTATATCTAGTGAGAAACTAGATGTTGAAGTTCAGCCTAAGCCTTCTGGAATCGATATGAACTCTGAGCCAGTTGCATTAAAAGAACAATCTGCAAGAACAACCATTGTGACAACCGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCGGAAGCTCAGGAAGTGCAATCAGAAAGAAAGGATTACGATGGCAGAAAGAATGAAGGAAAATTTTGGTGGAACACGCGGATCACAAATAGTCTTCCAGAACAGATTGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1161 0.3988 MDEAQGIPGSLPPFLAKTYEMVDDPSSDSIVSWSANSKSFIVWNPLEFSRDLLPKFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDYFVRGQPHHMKNIHRRKPVHSHSLQNLQTHVPLMESERQSLKNEIDKLKQDKELLLMELRRYEHELQTYEIQLHCSKDHLGKLEQAQQKMVSFVSEVLQKPGNALNLLSLTESVDRKRRVPRSSYFSDEASMEDAVETSRIRENAESTSSLALNMERLDQLESSLVVWENIAHVVGDTFVHVHSNMDIDESTICAVSPSISSEKLDVEVQPKPSGIDMNSEPVALKEQSARTTIVTTGVNDVFWEQFLTENPGSSEAQEVQSERKDYDGRKNEGKFWWNTRITNSLPEQIGHVGQAEKT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0529 386 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g0529 386 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g0529 386 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g0529 386 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g0529 386 Coils Coil 111 159 - -
Lan1g0529 386 Gene3D - 9 104 IPR036388 -
Lan1g0529 386 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 363 - -
Lan1g0529 386 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g0529 386 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan1g0529 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 363 IPR027725 -
Lan1g0529 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0529 Lan-Chr1 6356620 6359002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0529 9 386 HSF AT4G18880 53.061 1.85e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan1g0529 HSF_DNA-bind 2.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0529 K09419 - gmx:100798004 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0534 12 12069096 12071274 Lan1g0529 1 6356620 6359002 LSH
Lan1g1766 1 32238933 32241008 Lan1g0529 1 6356620 6359002 LSH