Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0517 ATGGGGATCCATGGTTTGTTACCACAATTGAAATCGATAATGGTTCCAATTCACATCAAGGACCTTAATGGTTCTTCCGTTGCTATTGATACCTATTCTTGGCTTCACAAAGGAGCATTATCTTGCAGCACCAACCTTTGTAAAGGGATTCCCACTACTAGGCATATTGAGTATTGTATGCATAGAGTGAATTTGTTGCGACATTTTGGTGTTAAACCTATTCTTGTGTTTGATGGAGGTCTTCTACCTATGAAGGGTGATCAAGAGAATAAGCGTGCTAGGGCAAGAAAGGAAAATTTTGAACGTGCAGTTCAACATGAGTCAGATGGAAATTCTACTGCTGCTTTTGAGTGCTACCAGAAAGCCGTTGACATTTCACCAGTGATTGCACTTGATTTAATTCAGGTATTGAAGCAGGAGAATGTGCAATATATTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATTACCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTACTCAATGCTAGAAAAGAATAAGGAGCTCAGTTTTGAAGGGTTCAACAGACAAATGCTCCTCGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGCCTCAAAAGGGCTCATGCAATCATAAAAAAATTTAAAAGTTACGACAAGGTTCTGAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTATGAAGAATCATTCAAAAAGGCTATACTGACTTTCCAATACCAACGGGTTTATGATCCAATTAATGAAGATATTGTTCATTTGTCTACTATACCTGATGATAGTGGTGATGAGTTAGACTTTTTAGGCCCACCGATGCCAAAAAATATAGCACAAGGTATAGCAAAAGGGGACCTCGATCCATTTACCAAAATGCCATTTGAGAAATTTCAGGGACAAAATCTTACGGCTAAATTGGCAATTGCGGGGACTTTTCAATTCAAAACTCCTGAAAGTGTGAAGAAAAAGATTGATCTACCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTGTTGAAGCGAAAAGGAACTTCAGAGCACCTCGGATATCACCTACAACTGCTAACGAAAGCACATTTGATTTCTCTTCTGGTAGTCCCCTGGAACATGAGACTTTAGAAGCCACTGCTAGTGGAACAAAGAACTCTGCTATATCTGTAGTTTCCTCTGAGAATTGGGGCAGTAGCCCTCCCGCTAACAACCATATTGAAAACAGCTTATCCTCCACAGTTTCAGAATTTGCAGAATCTCCATGTCATGTATATATGGTGGATGAGAAGAAGATAAGTACTGAACATACAATACTGCGACAACCCAGACAGCCAATTCATAAACCTTGTCTGGGGTCGCATAAGGAGGATGGACACACTAATGCCGAAGACACAGTTGAAGTTAAAACCAGGGAGGAAACAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAGATAATGATCCTAATGAGAAACAAGATCACCTGTCTAAAGCTGGCAACAAGGTAACTGTAAGGAGCCGTTATTTTCAGCACAAGGAAGTAGAAAATAATGATTGCAATGAGAAACAAGATCACTTGTCCAAATCTGGCATTGTAACGAGTGCTTATTTTCAGCACAAGCAAGTACAAAATAGTGACTGTGATGAGAGACAAGATCACCTTTCCAATGCTGGTGACAAGGTAATTGTAAGGAGCCGACATTTTCAGCACAAGGAAGTAGAAAATAATGTCTGTGACAAGAAACAAGATCACCATTACAAACCTGTCGCTCTCAAAGGTGAGAAAAGAAATGCCATATCTGACCGCTGTATGGAGAATAAAGACTTGAAACGGAAGATCTCCTCCAATGATAAGATTCAAATTGAAAATTTGCAGCCCAGGCAAATGCGTCATGCTTCTCCTCATAATAATGGTAAAAATCAATTGGAAGAGCCATTAGCAAATTTCTCCTTTACAAGTAACTGTGATCAACCTGTTGATAGATCATCTACAGAGAACAATGCTGATGAGAAATTCAGTGCAAACATTTCTCATCTAGGCCATTATTCAGAAATAGCTGAGAAGTCTGTGGAAAGGTTTGCCTCTGTGATATCATCCTTTAGATGCTCTTCCGGCTCTCGCGCCAGTGGTCTCCGTGCTCCTATGAAAGATGTTCGGAATACATGTGATAACAGGCCAACAACCGTGGACTTCAGACAATATGCATATGAGCCAAAACAGAAAAAAACTAGAAGAATCGGTCGTGGGAGTTAA 2385 0.4004 MGIHGLLPQLKSIMVPIHIKDLNGSSVAIDTYSWLHKGALSCSTNLCKGIPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKGDQENKRARARKENFERAVQHESDGNSTAAFECYQKAVDISPVIALDLIQVLKQENVQYIVAPYEADAQMTFLAITRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLEKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKKFKSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINEDIVHLSTIPDDSGDELDFLGPPMPKNIAQGIAKGDLDPFTKMPFEKFQGQNLTAKLAIAGTFQFKTPESVKKKIDLPVQKNLLTKYFCFASVEAKRNFRAPRISPTTANESTFDFSSGSPLEHETLEATASGTKNSAISVVSSENWGSSPPANNHIENSLSSTVSEFAESPCHVYMVDEKKISTEHTILRQPRQPIHKPCLGSHKEDGHTNAEDTVEVKTREETKVIVRSAYFQHKQVEDNDPNEKQDHLSKAGNKVTVRSRYFQHKEVENNDCNEKQDHLSKSGIVTSAYFQHKQVQNSDCDERQDHLSNAGDKVIVRSRHFQHKEVENNVCDKKQDHHYKPVALKGEKRNAISDRCMENKDLKRKISSNDKIQIENLQPRQMRHASPHNNGKNQLEEPLANFSFTSNCDQPVDRSSTENNADEKFSANISHLGHYSEIAEKSVERFASVISSFRCSSGSRASGLRAPMKDVRNTCDNRPTTVDFRQYAYEPKQKKTRRIGRGS* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0517 794 Gene3D - 1 207 - -
Lan1g0517 794 SMART xpgn3 1 99 IPR006085 GO:0004518
Lan1g0517 794 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Lan1g0517 794 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 768 IPR006084 -
Lan1g0517 794 SMART xpgineu 138 208 IPR006086 GO:0004518
Lan1g0517 794 MobiDBLite consensus disorder prediction 527 547 - -
Lan1g0517 794 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 338 IPR036279 -
Lan1g0517 794 MobiDBLite consensus disorder prediction 775 794 - -
Lan1g0517 794 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Lan1g0517 794 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Lan1g0517 794 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Lan1g0517 794 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lan1g0517 794 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Lan1g0517 794 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Lan1g0517 794 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Lan1g0517 794 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Lan1g0517 794 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Lan1g0517 794 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Lan1g0517 794 Gene3D - 209 281 - -
Lan1g0517 794 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Lan1g0517 794 PANTHER EXONUCLEASE 1 1 768 IPR032641 GO:0006281|GO:0035312
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0517 Lan-Chr1 6095253 6105660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0517 1 264 Core DNA Replication Machinery Family AT5G26680 25.632 1.34e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0517 K10746 - gmx:100798062 1049.65