Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0516 ATGCCTCGCAAAGTGTATGCTGGACCTGATTACAATGATTATGATGACTATGATGATTATGATGACTATGACGACTATGATGATGAAATCCAAGGCAATGGAGAGGGACCTGATACAAAGCAAGAGAGCATTAGGCCAGGGCTTTGGTCATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACATCATGCGATATTTGTGGTATTGTACGTCGTCCATTGGCTGACACCGGAACTTTCAACAGTAATAAATCAGACCAAGTTACTAACTCTAAAACTTCTCGGGTTTCCTCAAATATTAAAGAGAAGAATGAACATACTGTACCGCCAAATGTTGAAAGTTTAAAGAACTTATCATCCTTAATGCAGAAGGGCACGTGGGATAGTTCGGCTGAGAACAAGCATTCCAAAAATATGGCAACTGATGTGGAAACAAGTGGGAACACATCAACCAGCTTATCGGTATCTTTGGCAAAAGGCAAAGGTAACAATGTGAAGAAAATAAATTCTTCCAAAAATGGTACAGTTGATACCCAATCAAGCAAAGAAAAGTCAGGTAGTTCATCTGCACTGCCAAAAATCAGAGATAGTGATGAGATCAGTTCCTCTTCTATCAAAGATGGAAAAACAGAAAGTCTTTCCAGCAGTTTTAACAACACGGTTCTCGATGTTAGATCTGGAAATTCAGATAATACTAATGCTAAAGGAGCCCGCCCACAAGTTTCTTATAAACCAGAAAAATGGATGCTCTCTCAACAAGCTGATGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGTAAATCAACACTATCTGGTAGGTTACTGCACTTATTGGGACGAATTTCTCAAAAACAAATGCATAAATATGAAAAGGAGTCCAAGTTACAGGGCAAGGGGTCCTTTGCTTATGCCTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTGGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTAGTGCTTGACTCCCCCGGCCATAAGGATTTTATCCCTAACATGATTTCTGGTGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCTTCACTTGGCTCATTTGAAGCTGGCATGGATGGTAGTAAAGGACAAACAAGGGAACATGCACAACTTATCAGAAGTTTTGGTGTTGACCAGGTTATAGTTGCTGTTAATAAGATGGACGTTGTGGCGTACTCCAAAGATCGATTTGATTTTATTAGACAGCAGTTAGGAATGTTTCTCCGCACCTGTGGTTTCAAAGATTCTTCCCTATCATGGGTTCCTATAAGTGCCATGGAAAATCAGAATTTGGTGGCATCTCCTTCTAATACTAATTTCAAAAACTGGTACAATGGGCCTTATCTGTTAGATGCAATTGACTCAGTCCAACCTCCTACTAGAGAACTCTCAAAACCGCTACTAATGCCAATATGTGATGTCATCAAATCACCTACACTTGGACAGGTGTCTGCTTGTGGAAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTCATGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGTACTGTTGCAAGAGCTGGAGATAATGTAGCTGTGACGTTGCAAGGTGTCGATGGAAGTCTTGTAACGGCTGGAGGTGTACTATGCCATCCTGACTTTCCTGTTGCTGTTGCAAAACATTTGGAGCTGAAATTGCTTGTCTTGGATGGTGCAAATCCCATATTGATGGGTTCTCAGTTAGAGTTTCATGTACACCATGTAAAAGAACCTGCTAGAGTTTCAAAAATCTTGTCAGTACTTGATCCCAAGACCGGTAAGGTAACCAAAAAGTCCCCTCGCTGTCTCACCGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGGAGGAGCCAATCTGTGTGCTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATTATTGGGAAGAACAATTGCTGTTGGACTTGTAACAAGAATAATTGAAGAGCAAAACTAG 2073 0.4134 MPRKVYAGPDYNDYDDYDDYDDYDDYDDEIQGNGEGPDTKQESIRPGLWSCSICTYDNDESMTSCDICGIVRRPLADTGTFNSNKSDQVTNSKTSRVSSNIKEKNEHTVPPNVESLKNLSSLMQKGTWDSSAENKHSKNMATDVETSGNTSTSLSVSLAKGKGNNVKKINSSKNGTVDTQSSKEKSGSSSALPKIRDSDEISSSSIKDGKTESLSSSFNNTVLDVRSGNSDNTNAKGARPQVSYKPEKWMLSQQADDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKESKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDVVAYSKDRFDFIRQQLGMFLRTCGFKDSSLSWVPISAMENQNLVASPSNTNFKNWYNGPYLLDAIDSVQPPTRELSKPLLMPICDVIKSPTLGQVSACGKLEAGALRSGSKVLVMPSAVMGTVRSLERDSNACTVARAGDNVAVTLQGVDGSLVTAGGVLCHPDFPVAVAKHLELKLLVLDGANPILMGSQLEFHVHHVKEPARVSKILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILEEPICVLEFSSCKALGRVSLRLLGRTIAVGLVTRIIEEQN* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0516 690 Gene3D - 248 483 IPR027417 -
Lan1g0516 690 PANTHER OS04G0595300 PROTEIN 85 688 - -
Lan1g0516 690 MobiDBLite consensus disorder prediction 1 43 - -
Lan1g0516 690 Pfam Elongation factor Tu GTP binding domain 262 478 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 Gene3D - 41 80 - -
Lan1g0516 690 Pfam Elongation factor Tu C-terminal domain 582 685 IPR004160 -
Lan1g0516 690 MobiDBLite consensus disorder prediction 111 199 - -
Lan1g0516 690 SMART zf_4 47 71 IPR001876 -
Lan1g0516 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 504 IPR027417 -
Lan1g0516 690 MobiDBLite consensus disorder prediction 78 242 - -
Lan1g0516 690 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Lan1g0516 690 MobiDBLite consensus disorder prediction 12 32 - -
Lan1g0516 690 Gene3D Translation factors 487 576 - -
Lan1g0516 690 MobiDBLite consensus disorder prediction 207 239 - -
Lan1g0516 690 PRINTS GTP-binding elongation factor signature 263 276 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 PRINTS GTP-binding elongation factor signature 322 330 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 PRINTS GTP-binding elongation factor signature 342 352 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 PRINTS GTP-binding elongation factor signature 358 369 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 PRINTS GTP-binding elongation factor signature 403 412 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 Gene3D Translation factors 580 690 - -
Lan1g0516 690 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Lan1g0516 690 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Lan1g0516 690 MobiDBLite consensus disorder prediction 78 98 - -
Lan1g0516 690 SUPERFAMILY Translation proteins 481 576 IPR009000 -
Lan1g0516 690 PANTHER TRANSLATION FACTOR 85 688 - -
Lan1g0516 690 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 259 487 IPR000795 GO:0003924|GO:0005525
Lan1g0516 690 CDD EF1_alpha 263 482 - -
Lan1g0516 690 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 582 686 IPR009001 -
Lan1g0516 690 CDD HBS1_C_III 577 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0516 Lan-Chr1 6064249 6073219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0516 47 688 Eukaryotic Initiation Factors Gene Family AT5G10630 59.327 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0516 K14416 - gmx:100798594 1061.21