Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0474 ATGGAAGCAAGAGAAGGCATAAGTTCTGGTGTTACAGTGATAGGAGCTGAAGCTCCATCAGCTTATCATGTAGCACCAAGGAGTGAAGCTCCAAATCAGGTTCATGCCACTGATGCAGCAGCAGCTGCGGCTGCGACTGTGCCCACCACTGCATTGGTTGTCTCACCATTGAGTGTGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGCGGCAGACCTAGGAAATATGGGCCAGATGGGTCCGTTAATGGTACAGCGTTGTCACCAATGCCAATCTCATCTTCAGGTGACTTTAATGCATACTCTGGCAGTACAAACTTTATGACACATATCATCACTGTCAATGCGGGCAAGGACATTACAATGGAGGTTATATCCTTTTCGCAACGAGGTCCTCGAGCTATATGCATCTTGTCTGCTAATGGTTTCATTTCAAATGTTACACTTCGTCAACCTGATTCATCTGGTGGTACTTTGACCTATGAGGGTCGTTTTGAGATACTGTCATTATCTGGATCATTCATGCCTACGGGTAATCAAGAAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCGCTGGTAAGCCCTGATGGTCGTGTTGTAGGTGGAGGTGTTGCTGGTCTTCTTGTAGCTGCTGGTCCGGTGCAAGTGGTGGTAGGGAGTTTTTTACCAAGCAACTGGCAAGATCAGAAACCGAAGAAGTCGAAACCTGATTATGCACCGACTGCTGTTACTCAAGCCATTGCTGTGTCTTCTGCACCACCCCCAACTAATGCTGAAAAAGAGGATGCCATGGTTGGACATGTACTGCAAAATTCGGGAAACCTTAACTCGAGCCTTAATCCACCCTCCACATTTAGAAGAGAAAACTGGGTTAACACACTAGCAATGCCAGACTCAGGAAAATCAGCAACTGACATTAACATATCATTGCCCGATAGTTAA 945 0.4667 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHATDAAAAAAATVPTTALVVSPLSVGLDGTAVKKKRGRPRKYGPDGSVNGTALSPMPISSSGDFNAYSGSTNFMTHIITVNAGKDITMEVISFSQRGPRAICILSANGFISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTGNQETRSRSGGMSVSLVSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPSNWQDQKPKKSKPDYAPTAVTQAIAVSSAPPPTNAEKEDAMVGHVLQNSGNLNSSLNPPSTFRRENWVNTLAMPDSGKSATDINISLPDS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0474 314 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Lan1g0474 314 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 97 313 - -
Lan1g0474 314 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 96 - -
Lan1g0474 314 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 227 - -
Lan1g0474 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 96 IPR039605 GO:0003680
Lan1g0474 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 97 313 IPR039605 GO:0003680
Lan1g0474 314 ProSiteProfiles PPC domain profile profile. 104 245 IPR005175 -
Lan1g0474 314 Gene3D - 108 238 - -
Lan1g0474 314 CDD DUF296 109 199 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0474 Lan-Chr1 4598745 4604007 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0474 6 253 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.803 1.56e-88 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0474 - - gmx:100793726 416.001