Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0458 ATGGGAAGAGAAAGAGAGGATCCAAAGCAGCAACAACAACAACAACAGGTACCTTACACGGTGGAACAACTTGTTGCCCTAAATCGCTATAATCCTGATATTCTTCCCGATCTAGAAAACCATGTCAACGACCAGGTTTCATCACAGACATACAGCCTCGATGCAAATCTGTGCCTCCTTCGTCTCTACCAGTTTGAACCCGAGAAAACGAGTTCTCAGATTGTAGCCCGAATTTTGGTTAAGGCCCTCATGGCAATGCCTGCTCCGGACTTCAGCCTGTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACACTGATTGTCCTGTCTCACTATTTGGAGACTGGAAGATTTCGCCAGTTCTGGGATGAAGCAGCAAAAAACCGTCACATTGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATTCAAAACTATGCAATTCATGTTCTTTCCTTGACTTATCAAAAGGTCCCTAGAACTGTGCTTGCTGAGGCTATCAACACGGAAGGTTTATCCTTGGACAAATTCCTGGAACACCAAGTAGCGACCTCTGGTTGGGCTATTGAGAAAGGAAGCCAAGGAAGGGGCCAACTCATTGTCCTTCCTAGAAATGAATTCAATGACCCAATTTTGAAGAAAAACACTGCTGATAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTGGCTGA 714 0.4524 MGREREDPKQQQQQQQVPYTVEQLVALNRYNPDILPDLENHVNDQVSSQTYSLDANLCLLRLYQFEPEKTSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKNRHIVEAVPGFEQAIQNYAIHVLSLTYQKVPRTVLAEAINTEGLSLDKFLEHQVATSGWAIEKGSQGRGQLIVLPRNEFNDPILKKNTADSVPLEHITRIFPILG* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0458 237 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 14 237 IPR009374 GO:0003743|GO:0005737|GO:0005852
Lan1g0458 237 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 12 237 IPR009374 GO:0003743|GO:0005737|GO:0005852
Lan1g0458 237 Pfam CSN8/PSMD8/EIF3K family 70 197 IPR033464 -
Lan1g0458 237 SUPERFAMILY "Winged helix" DNA-binding domain 141 234 IPR036390 -
Lan1g0458 237 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K 14 237 - -
Lan1g0458 237 Gene3D - 132 235 IPR036388 -
Lan1g0458 237 SUPERFAMILY ARM repeat 14 139 IPR016024 -
Lan1g0458 237 Gene3D ARM repeat; domain 1 11 129 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Lan1g0458 237 ProSiteProfiles PCI domain profile. 51 210 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0458 Lan-Chr1 3788401 3799060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0458 1 237 Eukaryotic Initiation Factors Gene Family AT4G33250 75.105 3.38e-128 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0458 K15028 - cpap:110812019 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0458 1 3788401 3799060 Lan1g0458 1 3788401 3799060 ECH
Lan12g0948 12 16347082 16349369 Lan1g0458 1 3788401 3799060 LSH