Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0446 ATGAAGTCTCTATCCAATGTTTCTTTGCCTAATTCAGCTGAAGGAGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCCGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAACAGACTGACTTCATCCCCAGTTACCCAAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTACCCTACATGCTGATCCGGAAACTGATGAGGTCTATGCACAGATGACCCTTCAGCCTGTAAACAAATATGAGAAGGAAGCAATACTGGCATCAGATATTGGTCTCAAACAAAACCGACAACCTACTGAATTCTTTTGCAAAACCCTCACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTGCCCCGTAGAGCAGCCGAGAAAATATTTCCAGCTCTGGATTATTCAATGCAACCTCCTGCTCAGGAGCTTGTTGCCAAAGATTTGCATGATACTACATGGGCATTTAGACATATTTACCGCGGACAACCAAAGAGGCATCTACTGACTACTGGATGGAGTGTATTTGTCAGCACAAAAAGAGTGTTTGCTGGAGATTCTGTTCTGTTTATCAGAGATGAAAAACAGAATCTTCTTTTAGGTTTAAGGCGAGCTAACAGACAACAGACAGCACTGTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGTATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCGAAGTATAACAAAGCCATGTTCACTCAAGTTTCACTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGATTCAGGAGTGCGTAGATACATGGGTACGATCACTGGAATCAGTGACTTGGATCCTGTCCGATGGAAAAGTTCTCAGTGGCGCAATCTTCAGATTGGATGGGACGAATCAACAGCTGGGGAGCGCCCAAGCAGAGTTTCGCTTTGGGAAATTGAACCAGTAGTATCTCCTTTCTACATTTGTCCACCTCAATTTTTAAGGTCCAAGTTCCCCAGGCAACCCGGAATGCCAGATGATGACTCTGATATAGAAAATGCTTTCAAGAGAGCAATGCCCTGGCTTGGTGAAGACTTTGGCATGAAGGATTCCTCAAATTCAGTCTTCCCTGGTTTGAGTTTAATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTTCTCAACCAGCATTTTTCCCATCTATGCTTTCACCTAATACTCTGCACAGTAACCTTGGAACTGCTGACCCATCTAAATTGTTGACCTTTCAAGATCCTTCCCTCTCTGCAACAAGTCTTCAATTCAACAAACCTAATTTACCGAATCAAATCAATCAATTGCAACAGTTCCCACCAGCATGGCCTCAGCTGCAACAACAACAGCTACTGCAGCAACAGCAACAGCAACAGCAGCTGCAGCAACAGCAGCAACAACAGCAGCTGCAGCAACAGCAGCAACAACAACAGCAGCTGCATCAGCAGCAACAACAACAACAGCTGCATCAGCAGCAACAGCAACAACAGCAACAGCTACATCAGCAGCAACAACAACAGCAGCAGATGCTGCAGAATCCGCAACAGCAACATCATCAGCTGCAGCAGACGCAACAGCAACATCAACTTCAGTCATTGTTGCCAACGCAAGTAAACCAACTCCAGCAGCAGAGGCAACACCAGCTTCCTGAACCACAAAACATGCCATTACTCCAACAACAACAGCCCCAAATGCCTCAGCAGCTAGAAAAGAAGCCACAGTTGTATCAACTTGCTATTGTGAATAATGGCACAGTTTCTTCTAACCAGAATGCAAATCAGTTTGTACAACAGCCGATGGCCTACTCTCAATTTCAGCAGCAACAATTACTCTCAGGAGGTATCACACCCCAGCAAAATATCAAATCAACTAGTAAGAATACATTCCCACTGACGTCCCTACCACAAGATTCAAAATCTCAGCAACAGATAGACCAGCAAGCAAGCCTCTTACAGAGGCAGCAGCAAAACCTGCAACAGTCTCCACTTCAGTTATTGCAACAAAACCTGACACAGAGGGCGATGCAGCAATCACCAATGACTCAAATGTCACTACAAAACCCTTCAGAGCAACAACTACAGCTACAGTTTCTGCAGAAATTGCAGCAGCAACAGCAACATCTTCTTTCCACTTCTAACCCACTTTTGCAGTCTCAGTTTCTACAGCAACAAAGTAATCACCAACAAAATCAACAATTACCACAACTGCCTCTATCTCAGCATGAGCCACAACAGCTTGGCATTGGTAATAATGCATTACCAACAGAGAAGCTTCTCAACAGCAATAACTTCACCTCTTCTTCAGCTCTTGTGCAATCACAACAGCTTCCTGTGAATCAATCCCTAAATACACAGAAATCGGTTACTATCACTAGAGCTCCCTCTACTCTCACAGATGGAGATGCCCCATCGTGCTCAACCTCGCCATCTACTAATAACTGCCAGATATCTCCACCAAACCTCCTGAAAAGAAATCAACAAGATCCGACCACATTAGGGGGGAGTTTGGTAGTTGATTCCAGAAGTAATCTGATACAGGAGCTTCAGAGTAAGCCTGAAATTCAGATCAAACATGAGTTCCACAGTATAAAAGGACCCGACCATAAAAAATATAGAGGGACAATTCCTGATCAGCTGGAGGCTTCTTTTTCTGGAACATCTTACTGTCTTGACCCTGGTAATGTTCAGCAAAACCTACCACTTCCGAACTTCTTCATGGATGGGGATATCCAATCACACTCAAGAAACAATCTACCATTTGACTCTAATCTTGATGGACTAACATCTGATACTATGCTTTTAAGAGGGTCGGACTCTCAAAAAGATCTTCAAAATTTGTTGGCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTATCCACTGCTGACATCAGCTCACAGTCGTTCGGAGTGCCAAATGTGTCTTTTAATCCTGCTTGCTCAAGTGATGTTGGCATGAATGATACTGGGGTTTTGAATAATAGTGTGCGGGCTAACCAGACTCAACGAGTGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGATATGATGAACTCCGATATGATTTGGCTCGTATGTTTGGGATTGAAGGCCAGCTAGAAGATCCTCAAAGGACCGAGTGGAAACTGGTATATGTAGATCACGAAAGTGACATTCTTCTTGTTGGTGACGATCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCAGCTGAAGTGCAACAAATGAGTTTGGATGGGGATTTAGGTAATGTTCCTATCCCCAATCAAGCTTCTAGTGGAGCAGATAGTGGAAATGCATGGAGGGGACAGTATGATGATAACTCTGCTGCCTCATTTAATAGATAA 3549 0.4367 MKSLSNVSLPNSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEAILASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVAKDLHDTTWAFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIRDEKQNLLLGLRRANRQQTALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMFTQVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKSSQWRNLQIGWDESTAGERPSRVSLWEIEPVVSPFYICPPQFLRSKFPRQPGMPDDDSDIENAFKRAMPWLGEDFGMKDSSNSVFPGLSLMQWMSMQQNNQFSASQPAFFPSMLSPNTLHSNLGTADPSKLLTFQDPSLSATSLQFNKPNLPNQINQLQQFPPAWPQLQQQQLLQQQQQQQQLQQQQQQQQLQQQQQQQQQLHQQQQQQQLHQQQQQQQQQLHQQQQQQQQMLQNPQQQHHQLQQTQQQHQLQSLLPTQVNQLQQQRQHQLPEPQNMPLLQQQQPQMPQQLEKKPQLYQLAIVNNGTVSSNQNANQFVQQPMAYSQFQQQQLLSGGITPQQNIKSTSKNTFPLTSLPQDSKSQQQIDQQASLLQRQQQNLQQSPLQLLQQNLTQRAMQQSPMTQMSLQNPSEQQLQLQFLQKLQQQQQHLLSTSNPLLQSQFLQQQSNHQQNQQLPQLPLSQHEPQQLGIGNNALPTEKLLNSNNFTSSSALVQSQQLPVNQSLNTQKSVTITRAPSTLTDGDAPSCSTSPSTNNCQISPPNLLKRNQQDPTTLGGSLVVDSRSNLIQELQSKPEIQIKHEFHSIKGPDHKKYRGTIPDQLEASFSGTSYCLDPGNVQQNLPLPNFFMDGDIQSHSRNNLPFDSNLDGLTSDTMLLRGSDSQKDLQNLLANYGGAPRDIETELSTADISSQSFGVPNVSFNPACSSDVGMNDTGVLNNSVRANQTQRVRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTEWKLVYVDHESDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPIPNQASSGADSGNAWRGQYDDNSAASFNR* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0446 1182 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lan1g0446 1182 Coils Coil 495 561 - -
Lan1g0446 1182 CDD B3_DNA 125 217 IPR003340 GO:0003677
Lan1g0446 1182 ProSiteProfiles PB1 domain profile. 1055 1148 IPR000270 GO:0005515
Lan1g0446 1182 PANTHER AUXIN RESPONSE FACTOR 19 1 479 - -
Lan1g0446 1182 PANTHER AUXIN RESPONSE FACTOR 19 661 1169 - -
Lan1g0446 1182 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan1g0446 1182 MobiDBLite consensus disorder prediction 840 876 - -
Lan1g0446 1182 MobiDBLite consensus disorder prediction 557 576 - -
Lan1g0446 1182 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Lan1g0446 1182 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 661 1169 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan1g0446 1182 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 479 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan1g0446 1182 Gene3D - 1050 1144 - -
Lan1g0446 1182 SMART B3_2 126 228 IPR003340 GO:0003677
Lan1g0446 1182 MobiDBLite consensus disorder prediction 1153 1182 - -
Lan1g0446 1182 Gene3D - 124 227 IPR015300 -
Lan1g0446 1182 SUPERFAMILY CAD & PB1 domains 1068 1133 - -
Lan1g0446 1182 Pfam AUX/IAA family 1046 1141 IPR033389 -
Lan1g0446 1182 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lan1g0446 1182 Gene3D - 289 361 - -
Lan1g0446 1182 MobiDBLite consensus disorder prediction 665 690 - -
Lan1g0446 1182 MobiDBLite consensus disorder prediction 1148 1182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0446 Lan-Chr1 3588196 3595697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0446 1 490 B3 DNA Binding Superfamily AT1G19220 81.020 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan1g0446 AUX_IAA 6.2e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0446 - K14486 pvy:116118408 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0446 1 3588196 3595697 Lan1g0446 1 3588196 3595697 ECH
Lan12g0957 12 16427281 16434584 Lan1g0446 1 3588196 3595697 LSH
Lan1g0446 1 3588196 3595697 Lan15g0190 15 2043693 2050653 PCT
Lan1g0446 1 3588196 3595697 Lan14g0101 14 1340724 1351366 PCT
Lan15g0190 15 2043693 2050653 Lan1g0446 1 3588196 3595697 PCT
Lan14g0101 14 1340724 1351366 Lan1g0446 1 3588196 3595697 PCT