Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan1g0444 | ATGCAGCAGCAGAGGCTAAGGAATCATGCCATGATGCAACACTCTATGTTCAACCACCCTTCTCTCCTTACTCCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTAGGCAACATTCACCCTCAGGTTACCGAAACCCTACTTCAAGAGCTTTTTTCAAGTGCAGGTGCCCTTGAAGGATGCAAGCTCATTAGAAAAGAGAAGTCCTCATATGGCTTTGTGGACTACTTCGATCGCCGTTCAGCTGCATTCGCCATTGTAACCCTCAATGGGAGACAAATTTTTGGGCTGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACGTCAGGCCATTTTAATATTTTTGTTGGTGATCTTAGCCCCGAGGTGACAGATGCAACATTGTTTGCTTTCTTCTCAGTATATCCTAGTTGTTCAGATGCTAGAGTAATGTGGGATCAGAAGACAAGCCGTTCCAGGGGATTTGGCTTTGTATCTTTTCGGAATCAACAGGAAGCACAAAGTGCCATAAATAATTTAACTGGAAAGTGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCTACAAAGGGGGCTAATGTCAATGATGAGAAGCACATTTTGGATTCGAAGACTGTTGTGGAGTTAACTAATGCAACATCTGAAGGCAAGGAACTAACCAGAGATGATGCTCCAGAGAAGAATCTTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCAGAGGTTACTTCTGTTGATCTCCACCATCATTTTCATGCCCTTGGTGCTGGGACTATCGCAGATGTTAGGGTGCAACGAGGCAAAGGTTTCGGGTTTGTGAGATACAGTACACATGCTGAAGCAGCTCTTGCTATACAGATTGGTAATGCTCGAATTCTATTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAACCTACTCCTCCGGGTATAGCCTCAGCTCCTCTTCCCCTACCTACTGCTGCTGCTAATGTGCCAGGTTTTTCACTTGCCGGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGCAAAATGGGAGGTGTACATGCCCTTTTGCATCCGCAGGGTCAGCTTGCCCTGAAGCAAGCAGCCATGGGAATGGGGGCTCCTGGGGTTGGTTATGATGCAGGATTCCAGGGTGTTGCGACTTCCCAGCACCCAATGTACTATCAGTAA | 1236 | 0.4652 | MQQQRLRNHAMMQHSMFNHPSLLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTETLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRRSAAFAIVTLNGRQIFGLPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFAFFSVYPSCSDARVMWDQKTSRSRGFGFVSFRNQQEAQSAINNLTGKWLGSRQIRCNWATKGANVNDEKHILDSKTVVELTNATSEGKELTRDDAPEKNLQYTTVYVGNLAPEVTSVDLHHHFHALGAGTIADVRVQRGKGFGFVRYSTHAEAALAIQIGNARILFGKPVKCSWGSKPTPPGIASAPLPLPTAAANVPGFSLAGLAAYERQMALSKMGGVHALLHPQGQLALKQAAMGMGAPGVGYDAGFQGVATSQHPMYYQ* | 412 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan1g0444 | 411 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | PANTHER | NUCLEOLYSIN TIAR-LIKE PROTEIN | 2 | 407 | - | - | |
Lan1g0444 | 411 | SUPERFAMILY | RNA-binding domain, RBD | 45 | 207 | IPR035979 | GO:0003676 | |
Lan1g0444 | 411 | Gene3D | - | 229 | 329 | IPR012677 | - | |
Lan1g0444 | 411 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 2 | 407 | - | - | |
Lan1g0444 | 411 | CDD | RRM1_TIA1_like | 48 | 118 | - | - | |
Lan1g0444 | 411 | SUPERFAMILY | RNA-binding domain, RBD | 244 | 329 | IPR035979 | GO:0003676 | |
Lan1g0444 | 411 | SMART | rrm2_1 | 132 | 205 | IPR003954 | GO:0003676 | |
Lan1g0444 | 411 | SMART | rrm2_1 | 47 | 116 | IPR003954 | GO:0003676 | |
Lan1g0444 | 411 | CDD | RRM3_TIA1_like | 251 | 325 | - | - | |
Lan1g0444 | 411 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 325 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | Gene3D | - | 129 | 218 | IPR012677 | - | |
Lan1g0444 | 411 | Gene3D | - | 1 | 128 | IPR012677 | - | |
Lan1g0444 | 411 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 113 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 318 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | SMART | rrm1_1 | 47 | 116 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | SMART | rrm1_1 | 132 | 205 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | SMART | rrm1_1 | 252 | 321 | IPR000504 | GO:0003723 | |
Lan1g0444 | 411 | CDD | RRM2_PUB1 | 132 | 206 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan1g0444 | Lan-Chr1 | 3576721 | 3581198 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan1g0444 | 47 | 319 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.207 | 1.49e-17 | 82.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan1g0444 | K13201 | - | gmx:100813736 | 708.753 |