Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0444 ATGCAGCAGCAGAGGCTAAGGAATCATGCCATGATGCAACACTCTATGTTCAACCACCCTTCTCTCCTTACTCCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTAGGCAACATTCACCCTCAGGTTACCGAAACCCTACTTCAAGAGCTTTTTTCAAGTGCAGGTGCCCTTGAAGGATGCAAGCTCATTAGAAAAGAGAAGTCCTCATATGGCTTTGTGGACTACTTCGATCGCCGTTCAGCTGCATTCGCCATTGTAACCCTCAATGGGAGACAAATTTTTGGGCTGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACGTCAGGCCATTTTAATATTTTTGTTGGTGATCTTAGCCCCGAGGTGACAGATGCAACATTGTTTGCTTTCTTCTCAGTATATCCTAGTTGTTCAGATGCTAGAGTAATGTGGGATCAGAAGACAAGCCGTTCCAGGGGATTTGGCTTTGTATCTTTTCGGAATCAACAGGAAGCACAAAGTGCCATAAATAATTTAACTGGAAAGTGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCTACAAAGGGGGCTAATGTCAATGATGAGAAGCACATTTTGGATTCGAAGACTGTTGTGGAGTTAACTAATGCAACATCTGAAGGCAAGGAACTAACCAGAGATGATGCTCCAGAGAAGAATCTTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCAGAGGTTACTTCTGTTGATCTCCACCATCATTTTCATGCCCTTGGTGCTGGGACTATCGCAGATGTTAGGGTGCAACGAGGCAAAGGTTTCGGGTTTGTGAGATACAGTACACATGCTGAAGCAGCTCTTGCTATACAGATTGGTAATGCTCGAATTCTATTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAACCTACTCCTCCGGGTATAGCCTCAGCTCCTCTTCCCCTACCTACTGCTGCTGCTAATGTGCCAGGTTTTTCACTTGCCGGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGCAAAATGGGAGGTGTACATGCCCTTTTGCATCCGCAGGGTCAGCTTGCCCTGAAGCAAGCAGCCATGGGAATGGGGGCTCCTGGGGTTGGTTATGATGCAGGATTCCAGGGTGTTGCGACTTCCCAGCACCCAATGTACTATCAGTAA 1236 0.4652 MQQQRLRNHAMMQHSMFNHPSLLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTETLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRRSAAFAIVTLNGRQIFGLPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFAFFSVYPSCSDARVMWDQKTSRSRGFGFVSFRNQQEAQSAINNLTGKWLGSRQIRCNWATKGANVNDEKHILDSKTVVELTNATSEGKELTRDDAPEKNLQYTTVYVGNLAPEVTSVDLHHHFHALGAGTIADVRVQRGKGFGFVRYSTHAEAALAIQIGNARILFGKPVKCSWGSKPTPPGIASAPLPLPTAAANVPGFSLAGLAAYERQMALSKMGGVHALLHPQGQLALKQAAMGMGAPGVGYDAGFQGVATSQHPMYYQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0444 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Lan1g0444 411 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 407 - -
Lan1g0444 411 SUPERFAMILY RNA-binding domain, RBD 45 207 IPR035979 GO:0003676
Lan1g0444 411 Gene3D - 229 329 IPR012677 -
Lan1g0444 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Lan1g0444 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 407 - -
Lan1g0444 411 CDD RRM1_TIA1_like 48 118 - -
Lan1g0444 411 SUPERFAMILY RNA-binding domain, RBD 244 329 IPR035979 GO:0003676
Lan1g0444 411 SMART rrm2_1 132 205 IPR003954 GO:0003676
Lan1g0444 411 SMART rrm2_1 47 116 IPR003954 GO:0003676
Lan1g0444 411 CDD RRM3_TIA1_like 251 325 - -
Lan1g0444 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 325 IPR000504 GO:0003723
Lan1g0444 411 Gene3D - 129 218 IPR012677 -
Lan1g0444 411 Gene3D - 1 128 IPR012677 -
Lan1g0444 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Lan1g0444 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 113 IPR000504 GO:0003723
Lan1g0444 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 318 IPR000504 GO:0003723
Lan1g0444 411 SMART rrm1_1 47 116 IPR000504 GO:0003723
Lan1g0444 411 SMART rrm1_1 132 205 IPR000504 GO:0003723
Lan1g0444 411 SMART rrm1_1 252 321 IPR000504 GO:0003723
Lan1g0444 411 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0444 Lan-Chr1 3576721 3581198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0444 47 319 Eukaryotic Initiation Factors Gene Family AT3G16380 26.207 1.49e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0444 K13201 - gmx:100813736 708.753