Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0443 ATGTCGAGTTCGTCGGAGATTTCTGCTGTTTCCGGTCAGAAGCCGCCGGAGAAGTTTACGTTCTCTCAGACTTGTAGTTTATTGAGCCAATACCTTAAGGAGAAGGGTACTTTCGGTGATCTTACTCTTGGGATGACATGCACCACCGAAACAATTGGGTCACCTGAGACATCTTGTCTCTCTGCAATGGACTTGTTTCCTACTAAGGAAAACAACCTAACAACTATGGATTTGCTCTCTCCACATATTGCTTATAACCCTCACTCAACAAAAGAGGTTCCAACTTTGGTCAATCCAAGTGCATTTAAGTCTGTGGGCAAGGAACCCAAAACTTCACAATTGACAATCTTTTATGGTGGACAAGTTATTGTTTATGATGATTTCCCTGCTGAAAAAGCTGAGGAGATTATGTCCTTTGCTAGAAAAGGAATCTCTCAAAACCAGAATACCCCTGTATATGCTCACACTCAGCCTTCAATGATTCCTAGTATCATCCCTGCTAACTTGATTCAGGAGCATCCTCATCATGCACCACCCACAACACCAATTGTTTGTGATCTACCAATTGCTCGGAAAGCCTCCCTTCACCGTTTCCTGGAGAAGAGGAAGGATAGAATTGCTGCCAAAGCTCCATACAAAACAAGCAATGCCATTGCTGCACCTAATAAGCCAGTTGATGAATCAATGGCATGGCTTGGATTGGCTGCTAAATCAACTCTCTGA 723 0.4329 MSSSSEISAVSGQKPPEKFTFSQTCSLLSQYLKEKGTFGDLTLGMTCTTETIGSPETSCLSAMDLFPTKENNLTTMDLLSPHIAYNPHSTKEVPTLVNPSAFKSVGKEPKTSQLTIFYGGQVIVYDDFPAEKAEEIMSFARKGISQNQNTPVYAHTQPSMIPSIIPANLIQEHPHHAPPTTPIVCDLPIARKASLHRFLEKRKDRIAAKAPYKTSNAIAAPNKPVDESMAWLGLAAKSTL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0443 240 ProSiteProfiles Tify domain profile. 107 142 IPR010399 -
Lan1g0443 240 SMART tify_2 107 142 IPR010399 -
Lan1g0443 240 PANTHER PROTEIN TIFY 10A 16 235 - -
Lan1g0443 240 Pfam tify domain 108 140 IPR010399 -
Lan1g0443 240 Pfam Jas motif 188 212 IPR018467 -
Lan1g0443 240 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 235 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0443 Lan-Chr1 3572478 3574732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0443 1 237 Tify Gene Family AT1G19180 42.366 1.45e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan1g0443 tify 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0443 K13464 - gmx:100527510 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0443 1 3572478 3574732 Lan1g0443 1 3572478 3574732 ECH
Lan12g0959 12 16446447 16448923 Lan1g0443 1 3572478 3574732 LSH
Lan1g1316 1 22866242 22868277 Lan1g0443 1 3572478 3574732 LSH
Lan1g0443 1 3572478 3574732 Lan15g0188 15 2014348 2016921 PCT
Lan1g0443 1 3572478 3574732 Lan14g0104 14 1376743 1379156 PCT
Lan15g0188 15 2014348 2016921 Lan1g0443 1 3572478 3574732 PCT
Lan14g0104 14 1376743 1379156 Lan1g0443 1 3572478 3574732 PCT