Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0425 ATGAATACTCAGCTCAGTAAGAAGAGAAAGTTCGTAGCCGATGGAGTTTTCTTCGCTGAACTGAATGAGGTTCTAACCAGAGAGCTTGCTGAGGATGGTTACTCAGGTGTTGAGGTTAGGGTTACGCCATTGCGCACTGAGATCATTATAAGAGCCACTCGCACTCAAGCCGTACTTGGTGAGAAGGGAAGAAGAATCAGAGAGCTTACATCAGTGGTGCAGAAGAGATTCAAATTTGAAGAGAACACTGTAGAGCTATATGCTGAGAAGGTGAACAACCGTGGTCTTTGTGCTATTGCACAAGCTGAATCCCTTCGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGCAGGGCTTGTTATGGTGTCTTGAGATTCGTCATGGAAAGTGGTGCAAAGGGTTGTGAGGTCATTGTCAGTGGTAAATTGAGGGCCCAAAGAGCCAAATCTATGAAGTTCAAGGATGGGTATATGATTTCCTCTGGGCAACCAGTCAAGGATTACATAGACTCGGCAGTAAGACATGTGCTCCTCAGACAGGGTGTTCTTGGAATCAAGGTCAAGATTATGCTTGATTATGATCCTAAGGGGAAGCAAGGTCCTAAAACTCCCCTCCCTGATATTGTCACAATTTACACTCCAAAAGAGGAGGAAGAATACATCAGACCTGCTGCTGTTGCTGTGCTCGCTAATGAGGTTGAAATCCCTGTGGCTTGA 714 0.4566 MNTQLSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPLRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFEENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDYDPKGKQGPKTPLPDIVTIYTPKEEEEYIRPAAVAVLANEVEIPVA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0425 237 CDD 40S_S3_KH 15 95 - -
Lan1g0425 237 SMART kh_6 42 111 IPR004087 GO:0003676
Lan1g0425 237 Pfam KH domain 20 93 IPR004044 GO:0003723
Lan1g0425 237 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Lan1g0425 237 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Lan1g0425 237 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 234 - -
Lan1g0425 237 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 234 - -
Lan1g0425 237 Gene3D - 93 230 IPR036419 -
Lan1g0425 237 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lan1g0425 237 Gene3D - 1 91 IPR015946 -
Lan1g0425 237 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Lan1g0425 237 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Lan1g0425 237 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0425 Lan-Chr1 3402810 3406453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0425 1 229 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.900 3.89e-148 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0425 K02985 - gmx:100800747 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0425 1 3402810 3406453 Lan1g0425 1 3402810 3406453 ECH