Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0420 ATGGATGGCGGAACACACTATAATCCTCGCACTGTAGAACAAGTTTTCAAAGACTTCAAAGGACGTAGAACTGCTATCATCAAAGCCCTCACCACTGATGTGGAAGAATTTTTCCATCAATGTGATCCTGAAAAGGATAATCTTTGTCTGTATGGGCTCCCCACTGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAGCCTGCGTTGGGCATAAACTTTGCCAGGGATGGGATGCAAGAAAAGGACTGGTTGTCTTTGGTTGCTGTTCACAGTGATGCTTGGTTACTTGCTGTGGCTTTCTATTTCGGGGAAAGATTTGGTTTTGATAGAGCGGACAGGAAACGCCTGTTCACCATGGTTAATGATCTACCTACAACTTTTGAGGTTGTGACTGGAACTGCCAAGAAACAAAGTATCGAAAAATCATCCATTTCGAACATCACTGGCAACAGAACGAAGTCTGGTTCAAAAGGGCAAGGATCTGAATCAGGGAAGTATTCAAAGGTAGCAGAGGAGGAAGATGATGGGTTAGTTGAAGAATACGAGGGGTTAGTAGAAGAAGACGAGGAGCATGGGGAGACCTTGTGTGGAGCATGTGGGGAAAACTATGCATCTGATGAGTTTTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACTCCTGCCAGGGCTGATCACATCAGGCAGTATAAGTGTCCGTCGTGCAGCAATAAGAGAGCACGGCCATATCATTGGGTGGGTTAG 786 0.4517 MDGGTHYNPRTVEQVFKDFKGRRTAIIKALTTDVEEFFHQCDPEKDNLCLYGLPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGERFGFDRADRKRLFTMVNDLPTTFEVVTGTAKKQSIEKSSISNITGNRTKSGSKGQGSESGKYSKVAEEEDDGLVEEYEGLVEEDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARADHIRQYKCPSCSNKRARPYHWVG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0420 261 MobiDBLite consensus disorder prediction 148 170 - -
Lan1g0420 261 CDD PHD_AL_plant 202 252 IPR044104 -
Lan1g0420 261 MobiDBLite consensus disorder prediction 148 180 - -
Lan1g0420 261 Pfam PHD-finger 203 252 IPR019787 -
Lan1g0420 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Lan1g0420 261 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Lan1g0420 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 256 - -
Lan1g0420 261 SMART PHD_3 202 250 IPR001965 -
Lan1g0420 261 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lan1g0420 261 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Lan1g0420 261 PANTHER CPG BINDING PROTEIN 3 256 IPR045104 GO:0006355|GO:0042393
Lan1g0420 261 SUPERFAMILY FYVE/PHD zinc finger 194 257 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0420 Lan-Chr1 3368823 3371799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0420 1 255 Alfin-like Transcription Factor Family AT3G42790 71.094 7.08e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan1g0420 Alfin 8.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0420 - - gmx:100500110 439.113