Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0414 ATGGAACCTCGTGTTGGTAATAAGTTTCGGTTGGGACGGAAAATCGGTAGTGGTTCATTTGGGGAGATCTATTTAGGTACTAATATTCAGACTAATGAAGAAGTTGCAATTAAGCTTGAAAATGTCAAGACGAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGTTTCGCGGTGGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCACTAAAGACCGTCCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTATTCATTCTAAATCATTTCTGCATCGGGATATCAAGCCAGATAACTTTTTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGATTGGCTAAGAAATATAGAGATAGTTCAACCCACCAACACATTCCTTACAGGGAAAATAAGAACCTGACTGGGACTGCAAGATATGCTAGCATAAATACTCACCTTGGCATTGAGCAAAGCCGGAGAGATGATTTAGAGTCTCTTGGATATGTTTTAATGTACTTCCTAAGGGGAAGCCTTCCTTGGCAGGGACTAAAAGCAGGAACCAAGAAACAGAAGTATGACAAAATCAGTGAGAAAAAGGTTTCTACCTCGATTGAAGCCTTGTGTAGAAGCTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCACTAAGGTTTGATGATAAGCCAGCCTATGATTATCTCAAAAGGACATTTCGCGAACTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGACTGGACCATATTGAAATATCAACAATCACAGCTTGCCACTCCTCCAGCACGGGCCATTGGTCTTGGTGCTGGAACCAGTTCTGGAATTCCACCAGCTGTTAATAATGCTGATAGACAGACAGGAGGTGAAGAAGGTCGACCTCCTCCTGGTTTGGTGTCAGTGGATTCTTCGAGGCGAAGAATGCCTGCACCCATCTTAAATTCTTTATCAAGTGCCAATTTCCTGGGCCAGTCAAGTGGATCATCAAGGCGAGCTGCTGCTTCTAGTAGCCGTGATGCATTTGTTGGTGGTGAGTCAGATATTCTTGCTCGTACAGCTAGTCCTGGAGCAACACAGAGATTTTTGAGTGGGCAAAGAAGTTCACCAATAGGTTCTTCTGATCCTACGAGAGTGTCAGCTGCGAGAAATACTCATCATGTCAAGAATTATGACACTGCACTCAGGGGCATGGAGAGTTTGCAGTTAGAGAATGATGAGAGGACCCATTATTAA 1359 0.426 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRVLQGGTGIPNVRCFAVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIEALCRSYPTEFASYFHYCRSLRFDDKPAYDYLKRTFRELFIREGFQFDYVFDWTILKYQQSQLATPPARAIGLGAGTSSGIPPAVNNADRQTGGEEGRPPPGLVSVDSSRRRMPAPILNSLSSANFLGQSSGSSRRAAASSSRDAFVGGESDILARTASPGATQRFLSGQRSSPIGSSDPTRVSAARNTHHVKNYDTALRGMESLQLENDERTHY* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0414 452 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g0414 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan1g0414 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g0414 452 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g0414 452 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lan1g0414 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan1g0414 452 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 434 IPR030509 GO:0004672|GO:0005524
Lan1g0414 452 MobiDBLite consensus disorder prediction 311 346 - -
Lan1g0414 452 MobiDBLite consensus disorder prediction 394 425 - -
Lan1g0414 452 PANTHER CASEIN KINASE-RELATED 1 434 - -
Lan1g0414 452 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Lan1g0414 452 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0414 Lan-Chr1 3318715 3325262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0414 7 223 EF-hand Containing Proteins AT2G17890 26.667 3.00e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan1g0414 Pkinase 1.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0414 K02218 - gmx:100811567 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1273 1 22529193 22534491 Lan1g0414 1 3318715 3325262 LSH
Lan1g0414 1 3318715 3325262 Lan14g0132 14 1629204 1636094 PCT
Lan14g0132 14 1629204 1636094 Lan1g0414 1 3318715 3325262 PCT