Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0394 ATGGAAAATTTTGGAGACGAGTATAAGCATTATTGGGAGACCAACATGTTCCTCCAAACTGAAGAGCTTGACAGCTGGGGATTGGATGAAGCCTTATCTGGGTACTACGATTCAAGCTCACCAGACGGTGGTACTTCATCGGCGGCATCAAAGAACATTGCCTCAGAGAGAAATAGGAGGAAGAAACTCAATGATAGACTTTTTGCACTTAGAGCTGTGGTCCCAAATATTAGCAAGATGGATAAGATTTCTATACTTAAGGATGCTACTGAGTACATTCAACAGTTGCATGAGCAAGAGAAGAGCATCAAAGGTGAGATAATGGAGCTTGAATCTAGGAAGTTGAAAAACCCTAGCAGTGATTTTGAGCAGGAGATTCCTGTTTTGGTGAGGTCTAAGAAGATGAAAACTGAGCAGATAATTGATTATGTCAGTTCAAGATCCCTAATTGAAGTCATTGAGTTGAATGTTGCATACATGGGAGATAAGACATGTGTGGTGAACTTGACATGTATAAAAAGGACAGACACAATTCTAAAACTTTGTGAAGTGTTCGAATCTTTAGGGCTCAACATCATAACAGCCAATATCACTTCTTTTTCAACCACCATTTTGAACACAGCCTTCATTCATGCTGATGAAGAAGAGAAAGATGCATTGCAGATAAAAATTCATAATGCCATTTCAGCTATTAATGATCCTCATCTCATAGCTCAAGGAGCATATGATGAAGAAAAATGA 741 0.3887 MENFGDEYKHYWETNMFLQTEELDSWGLDEALSGYYDSSSPDGGTSSAASKNIASERNRRKKLNDRLFALRAVVPNISKMDKISILKDATEYIQQLHEQEKSIKGEIMELESRKLKNPSSDFEQEIPVLVRSKKMKTEQIIDYVSSRSLIEVIELNVAYMGDKTCVVNLTCIKRTDTILKLCEVFESLGLNIITANITSFSTTILNTAFIHADEEEKDALQIKIHNAISAINDPHLIAQGAYDEEK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0394 246 SMART finulus 53 102 IPR011598 GO:0046983
Lan1g0394 246 Coils Coil 93 113 - -
Lan1g0394 246 MobiDBLite consensus disorder prediction 38 53 - -
Lan1g0394 246 Gene3D - 45 114 IPR036638 GO:0046983
Lan1g0394 246 PANTHER TRANSCRIPTION FACTOR BHLH35 1 234 - -
Lan1g0394 246 MobiDBLite consensus disorder prediction 37 56 - -
Lan1g0394 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Lan1g0394 246 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Lan1g0394 246 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 234 - -
Lan1g0394 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0394 Lan-Chr1 3106626 3114384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0394 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.722 1.50e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g0394 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0394 - - gmx:100817978 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0394 1 3106626 3114384 Lan1g0394 1 3106626 3114384 ECH
Lan1g0394 1 3106626 3114384 Lan14g0143 14 1785331 1793893 PCT
Lan14g0143 14 1785331 1793893 Lan1g0394 1 3106626 3114384 PCT