Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0391 ATGTCTTCTCCATGCTTAAGTGGTGGTGGAGGAAGAACATATGGGTTAGATTTGGAATTTCTCAAATCAGCTTCATTCTCAGTATATTCTTCTTCATCTTCACCATCCTCAACAATCTCAGAATCAAGCAATTCACCATTAACAATCTCAACTAAAAAACCTAGAACGCAAAGAAAGAGACCCAATCAAACCTACAATGAAGCTTCAGCACTTCTTTCAACTGCATACCCAAATCTCTTTCCTTCAAAAACCCTCAAAACACAACCACCACAAAGTTTATTTTTTGAAGAACCCCCTTCATCGGAAATACTATTACCTTTCAGGGTTTTCGATAACTCTTCTTCCTTTTTGCTCCATCAACATGAGCCTAGCTTTTCAATGGAACCTAAAGTTCTAACTTTGCAAGAGAAACCGTGGCAAAGTCCGGGGGAGATAAATTCGGCTTCTGCGATGGTTAATTCAACTGAATTGGAGGAAGATTGTGGTGATGATTTCGATGCGGAATCAATTCTCGATGAGGAAATTGAAGAAGGGATTGATAGTATCATGGGGACTGTTGTGCAGCAAGAAGATTCAAACGGCGCAGTTTCGTGTTTTGGGATTCCGGCGATTGGTTTTGGAGGGAAATTGGATTGCAGGTTAGGGTTACGAGGGGCTCTTCGACACGTCGATGATGGTGGGAGCTTGTGGAATTTGCCGGCGGTTGATATACTTCAAATTCTGCCGAAGATTGTTAATAAGCCGCCACCGACGGCGGCGTTGCCGGAGAAGAAGAAGAAAAAGAAGAAGGTGGAGGTGAAGAATCTGGAACCGGTGAAGGAAAACGCTGTGGCGAAATCGAATCTGGGTTTGATGTTGAAATTGAATTACGAGGAGGTTAAGAATGCTTGGTCCGATAAGGGGTCACCGTTCGCCGATGATAGCCCGGTTTCCGATGTATCGGGAAATGACGCCACAGCTCGGTTATCTCAAATTGAATTGTTATGGGACAATGGAGGAGTAAGAGAAGCTAGTGTCCTACGCTATAAAGAAAAACGGCGTACTCGTCTTTTCTCAAAGAAGATCAGATACCAAGTCAGAAAGGTTAATGCTGATCAACGGCCCAGAATGAAGGGGCGATTTGTTACCAGGTCGAATTCTAGCAGAAGTGCTCACAGATGA 1161 0.4358 MSSPCLSGGGGRTYGLDLEFLKSASFSVYSSSSSPSSTISESSNSPLTISTKKPRTQRKRPNQTYNEASALLSTAYPNLFPSKTLKTQPPQSLFFEEPPSSEILLPFRVFDNSSSFLLHQHEPSFSMEPKVLTLQEKPWQSPGEINSASAMVNSTELEEDCGDDFDAESILDEEIEEGIDSIMGTVVQQEDSNGAVSCFGIPAIGFGGKLDCRLGLRGALRHVDDGGSLWNLPAVDILQILPKIVNKPPPTAALPEKKKKKKKVEVKNLEPVKENAVAKSNLGLMLKLNYEEVKNAWSDKGSPFADDSPVSDVSGNDATARLSQIELLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADQRPRMKGRFVTRSNSSRSAHR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0391 386 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515
Lan1g0391 386 Pfam CCT motif 335 377 IPR010402 GO:0005515
Lan1g0391 386 MobiDBLite consensus disorder prediction 28 52 - -
Lan1g0391 386 MobiDBLite consensus disorder prediction 28 63 - -
Lan1g0391 386 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 381 - -
Lan1g0391 386 PANTHER OS02G0148000 PROTEIN 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0391 Lan-Chr1 3081140 3084684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0391 284 379 C2C2-CO-like Transcription Factor Family AT1G73870 46.903 8.01e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan1g0391 CCT 3.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0391 - - aprc:113845796 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0391 1 3081140 3084684 Lan1g0391 1 3081140 3084684 ECH
Lan12g1022 12 16900407 16903433 Lan1g0391 1 3081140 3084684 LSH
Lan1g1251 1 22357982 22360055 Lan1g0391 1 3081140 3084684 LSH