Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0389 ATGAAGTTAAATAGCAGAGGACCTAAAAAATCCAGTCATTCCGATGCACAAGCTGAGTCAAAGCCAGATTCATCATTGAGATTCAAAATAACACGACACCGAGGTAAAATGCATATGCTAAAATCAAAATCTCGCACACAGAAAGTTGACACAAACATACCAAGGAAGAAAGTTACTGACTCTTCCATCAAGGGGCCAAGCAAGGTGTCTTCAACTAAGAAATTAACTATTAAGCAAAGTTCGCATAAAGCCGATGGAAAATTTCCACAGAATATGTCTTCAAATCTACAACCCAAAAAAGTTAGGGAAAAAGAGAAAGATGATGGGGAGGTAAAGCTTCAAAAAATAAAGAGAAGGAGAAAAAAGAAAAGGCAAAGGAATAATGTGAATCTTGACGATGCTTCACGTCTGCAGCGGAGAACTAGGTACCTTATAATCAAAATGAAGCTAGAGCAAAACCTTATTGATGCTTACTCTGCAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGTTACAAAGAGCACAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGCGACGCTATTCGCCAGTTGGATTCTCTGAGTGGCATAGAAGATCCAGTCATTGCTCCAGATGGATCTGCTAAACATAAACATATATTCTGTGCAAAGTGCAAGTTGTGTGAAGCTCTTCCAGACAATGATATTGTACTCTGTCATGGTACATGCAGTCGTGCTTTTCACCAAAAATGTCTTGATCCCCCTTTAGCCTCAGAACACATTCCTCCTGAAGGCCAGGGCTGGTTTTGTAAGTTTTGTGACTGTAAGATGAGAATACTGGAGGTAGTGAATGCACATCTTGGAACTCACTTCTCCTTGCACAGTACTTCACAGGATGTATTCAAGGATGAGGCTGCTATGCCCGATGGCGATACTGCATTACCGAATCCTGGAGAAGAATGGCCATCGGATGATTCTGAAGATGAAGATTATAACCCAGAGAGAAGAGAAGGCAACCACAACATCAACAACACAGAAGGAACTGATGATGATGCATCCGATGATGTCAGTAGTTCTGCGAGTCTGTGGTCTTACGACAGTGAATGTTCTCCGGTTGATGAACGTGTCAACCATGAATACTTTTCTGTCAATAGCAGCATAGATTCTGATGAATCCAAAGAAAAAGCCTGTGGCCGTAGGCATAGGAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTCGGGAAGGATGCTCCTGCATATGAACAAGTGAGTGAGGATGAAGACTGGGGTCCTAGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTGATGACTTTGCATGAATGTGAGAACAAACACCCCAATAATGAGCACCATGCAATGATAAGAGATGATTCTTCAGGTATACAAATCAGAAAGCCTTGTTTTAGGTTTCCACCCGCTGCGATTGAGTCTATATTCCTTTCATTTTCTTTTGAAATGAGCCAGAAGCTACGCCAAGTTTTTGCCGAGAATGAACTTCCTCCAAGATCGACGAAGGTGGATCTTTCAAAAGAGTTTGGACTTAGTGTTGAGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACGTAGCACTTAAAGCCAGAAAGCAGGTAGAAGGAGCAGATCAGGTTCATAGTTTTACTCCAAGGAAGAACTCTACATTGCAAAATATGGGAGAAGCTGAACTTTTGAAATCAAAGGCCTCAAAAATTACTGTGAACCATTCCACAAAGAATGTAAAAAATGTCACTGGTAAGATGAAGACAAAGTCAGATAGCAGTACTTTGATGAAAAGACAAGCAGAAATATTTTCACCTCAGCCAAGTGAAAATGTAAACAAGGACGTTATGGAGATCAGCGATGATGTGAGCTTGAAGAAACTATTGAAAAAAAGAAAGAGGAAGGCAAAGTTTACATTTGAAGGAGGTTATCACGAAGCCGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGATTAAACTTGATAGTATGAAGCAAAAATTAAGTGCAATTCAAAATTACAGAGGAAAGGGTTCTGATGAACCTCAGTCAAATGAGCCATCTACTATATTTGTACCTATTGCTGTGTTGAGGGAAAAGGTTGAATTATAA 2151 0.3993 MKLNSRGPKKSSHSDAQAESKPDSSLRFKITRHRGKMHMLKSKSRTQKVDTNIPRKKVTDSSIKGPSKVSSTKKLTIKQSSHKADGKFPQNMSSNLQPKKVREKEKDDGEVKLQKIKRRRKKKRQRNNVNLDDASRLQRRTRYLIIKMKLEQNLIDAYSAEGWKGQSREKIRPEKELQRAQKQILKCKLGIRDAIRQLDSLSGIEDPVIAPDGSAKHKHIFCAKCKLCEALPDNDIVLCHGTCSRAFHQKCLDPPLASEHIPPEGQGWFCKFCDCKMRILEVVNAHLGTHFSLHSTSQDVFKDEAAMPDGDTALPNPGEEWPSDDSEDEDYNPERREGNHNINNTEGTDDDASDDVSSSASLWSYDSECSPVDERVNHEYFSVNSSIDSDESKEKACGRRHRKAVDYKKLYDEMFGKDAPAYEQVSEDEDWGPSKRKRREKESDAVNTLMTLHECENKHPNNEHHAMIRDDSSGIQIRKPCFRFPPAAIESIFLSFSFEMSQKLRQVFAENELPPRSTKVDLSKEFGLSVEKVSKWFKNARYVALKARKQVEGADQVHSFTPRKNSTLQNMGEAELLKSKASKITVNHSTKNVKNVTGKMKTKSDSSTLMKRQAEIFSPQPSENVNKDVMEISDDVSLKKLLKKRKRKAKFTFEGGYHEAELEFERLSKVKIKLDSMKQKLSAIQNYRGKGSDEPQSNEPSTIFVPIAVLREKVEL* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0389 716 SMART HOX_1 495 551 IPR001356 GO:0003677
Lan1g0389 716 Gene3D - 495 559 - -
Lan1g0389 716 ProSiteProfiles 'Homeobox' domain profile. 495 547 IPR001356 GO:0003677
Lan1g0389 716 MobiDBLite consensus disorder prediction 1 111 - -
Lan1g0389 716 PANTHER POLYCOMB PROTEIN PCL 7 690 - -
Lan1g0389 716 CDD PHD_PRHA_like 221 273 IPR045876 -
Lan1g0389 716 Pfam Homeodomain 496 541 IPR001356 GO:0003677
Lan1g0389 716 ProSiteProfiles Zinc finger PHD-type profile. 219 276 IPR019787 -
Lan1g0389 716 SMART PHD_3 221 274 IPR001965 -
Lan1g0389 716 SUPERFAMILY FYVE/PHD zinc finger 216 278 IPR011011 -
Lan1g0389 716 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 7 690 - -
Lan1g0389 716 MobiDBLite consensus disorder prediction 63 97 - -
Lan1g0389 716 MobiDBLite consensus disorder prediction 8 30 - -
Lan1g0389 716 MobiDBLite consensus disorder prediction 43 57 - -
Lan1g0389 716 MobiDBLite consensus disorder prediction 306 360 - -
Lan1g0389 716 CDD homeodomain 502 550 IPR001356 GO:0003677
Lan1g0389 716 Pfam PHD-finger 225 276 IPR019787 -
Lan1g0389 716 SUPERFAMILY Homeodomain-like 495 554 IPR009057 -
Lan1g0389 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 284 IPR013083 -
Lan1g0389 716 MobiDBLite consensus disorder prediction 421 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0389 Lan-Chr1 3070721 3076885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0389 127 549 Homeobox Transcription Factor Family AT4G29940 51.230 9.21e-135 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lan1g0389 Homeodomain 6.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0389 - - gmx:100817639 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0389 1 3070721 3076885 Lan1g0389 1 3070721 3076885 ECH
Lan1g0389 1 3070721 3076885 Lan14g0144 14 1794830 1800797 PCT
Lan14g0144 14 1794830 1800797 Lan1g0389 1 3070721 3076885 PCT