Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0372 ATGTGGTGGAGTGTTGCGCTTGATCCTTCTAAATGCAGTAAGTTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAATATCTAAGTCTCGTGGTGCATCCGAGATGCTCCAGTCTTGGAGTCGTCAAGAGATTTTACAAATCTTGTGTGCGGAGATGGGAAAAGAAAGGAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAACACCTTCTAAAAATTGTTTCTGAAAATAAATCAGAGGGCCATGAAACAGATTCTGAACTACACTCTTCTGCTGCACATGGTCAGCAATCTGCAAAAAGGCAGAGAAAAATTGAGAATCCATCTCGATTACCTGTGCCTGCAAACAATGTTTCAGCCAATAATGATGGTGATATGGGTATTGCCACATATTGCAAAAACTCAGCTTGCAAAGCTACCTTAAATCAAGCAGATGCGTTTTGCAAAAGATGTTCATGCTGCATTTGCCATCAATATGATGACAACAAAGACCCAAGCCTGTGGTTAATATGTAGCTCCGAGTCTCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGCCATTGGCAAAAATGGTGAACGTCTCAAGCTTGATGGAGGCTTCTACTGTGTTTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCTAAAGATACCAGACGTGTGGACATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGGACTGAAATTTATCAAGAACTTCATAAAATTGTTGATGAAGCGGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGACTGGATCACCGGCGAAGTTTGGTAGGGGGATTGTGAATAGGCTTTCATCAGGACCAGAGGTTCAGAAACTTTGTGGTCTGGCTGTGGAATCACTTGATTCACTGCTTTCTAAAAGGATCTTGCCTTCATCACCTACTCCAACAATTCAAGGTGCTAATATGCTTGCTCCAAATATGTTGAGGTTTGAAGATGTCACTGCAACATCCCTCACTGTTATTTTGGGTTCTGAAGACCCTTCTAGAGAAAATATTGCAGGTTACATCTTGTGGCATCGTAAAGTTGATGATGTGGACTATCCAGTGGAGCCGACTTGCACTTTGCTTCTACCAAATAGGAGATTCAGTATCCGGGGTTTAACTCCAGCTAGAGAATATATTTTCAAAGTTGTTTCCAATGATTTGAGGGAGTTGGGCATGTGCGAAGTTCATATCTCAACAGAGCATGGTGAGGATGAGGTCCCTAATTGCTCAGCAACAGAAAGAAGTCAGAGCCCAGCAACCAATTGTAGTAGCCTTTCCAATCCGTCATCAGTTGAAGATGAAACTAACAACAGTAATCCATATAGTGATCAGACTGGTAATCAAGCAGACCATTATCGCACTTTTTACAAGGATTCTGACCAACTTGCTTCTGGAAATTTGTCTAGTGATGCTATGAACTGTTCCAATATAGTTGGAGTGGGACCTCCCACTGATGCAGATTCCTTATCAGACAAACAGCATGCTGCTGGAACTGCTGGATCCATTCCTGCCCCTGATGTACTAAAGCTTGAAAACAAGCATTCACGGGAGGAACAAGTCACCGAGGACATGAGCATTGATGACGGATTGAATTCCCTCATTCAAACTGGGAGGGAATGTGTGCCATTAGCAGGTACCTTAGAAGGAGGCTTGCCTAATACTCCTTGTAAGTTGGAAATGCTTAAAGATGGGCCCGGAAGAAATGGTAGATCAAAATCCGGTGGCAATGATCTAGAAAATGGATCAGGGAAAAGGGAGGGGCCCCAAGATGGAAGCACATCCAAGAAGGGAAGTGGGGAAAGACAAGATGAAGGGTGTACTGATCGTGATTTCGAGTATTATGTGAAGGTTATTAGATATTTAGAATGTGAAGGACATATAGAAAAGAACTTCAGGCAAAAGTTTCTGACTTGGTACAGCTTAAGAGCAACCTCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAGCTTGTGGACACCTTTTCAGAATGCATATCAAGCAAGAGAACTTCAATGGTGCAAGCGGGATTCTGCATGAAGCTTTGGCACTGA 2175 0.4216 MWWSVALDPSKCSKLSMEEKRELVYEISKSRGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLKIVSENKSEGHETDSELHSSAAHGQQSAKRQRKIENPSRLPVPANNVSANNDGDMGIATYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSESPFPGVSCGLSCHLECALKHDGSAIGKNGERLKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEIYQELHKIVDEAVKKLEPEVGPLTGSPAKFGRGIVNRLSSGPEVQKLCGLAVESLDSLLSKRILPSSPTPTIQGANMLAPNMLRFEDVTATSLTVILGSEDPSRENIAGYILWHRKVDDVDYPVEPTCTLLLPNRRFSIRGLTPAREYIFKVVSNDLRELGMCEVHISTEHGEDEVPNCSATERSQSPATNCSSLSNPSSVEDETNNSNPYSDQTGNQADHYRTFYKDSDQLASGNLSSDAMNCSNIVGVGPPTDADSLSDKQHAAGTAGSIPAPDVLKLENKHSREEQVTEDMSIDDGLNSLIQTGRECVPLAGTLEGGLPNTPCKLEMLKDGPGRNGRSKSGGNDLENGSGKREGPQDGSTSKKGSGERQDEGCTDRDFEYYVKVIRYLECEGHIEKNFRQKFLTWYSLRATSQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSMVQAGFCMKLWH* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0372 724 CDD FN3 338 412 IPR003961 GO:0005515
Lan1g0372 724 MobiDBLite consensus disorder prediction 512 556 - -
Lan1g0372 724 PANTHER VIN3-LIKE PROTEIN 2-RELATED 5 724 - -
Lan1g0372 724 Gene3D Immunoglobulins 321 418 IPR013783 -
Lan1g0372 724 MobiDBLite consensus disorder prediction 538 552 - -
Lan1g0372 724 MobiDBLite consensus disorder prediction 438 477 - -
Lan1g0372 724 PANTHER VIN3-LIKE PROTEIN 2-RELATED 5 724 IPR044514 GO:0010048|GO:0040029
Lan1g0372 724 Pfam PHD - plant homeodomain finger protein 133 252 IPR032881 -
Lan1g0372 724 MobiDBLite consensus disorder prediction 430 477 - -
Lan1g0372 724 MobiDBLite consensus disorder prediction 581 634 - -
Lan1g0372 724 MobiDBLite consensus disorder prediction 82 120 - -
Lan1g0372 724 CDD PHD_VIN3_plant 153 218 - -
Lan1g0372 724 SUPERFAMILY Fibronectin type III 338 413 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0372 Lan-Chr1 2896250 2907952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0372 6 466 PHD Gene Family AT4G30200 55.040 7.37e-162 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0372 - - gmx:100794721 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0372 1 2896250 2907952 Lan1g0372 1 2896250 2907952 ECH
Lan12g1035 12 17016797 17021212 Lan1g0372 1 2896250 2907952 LSH
Lan1g1235 1 22177007 22181712 Lan1g0372 1 2896250 2907952 LSH