Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0368 ATGAACAGTTTTGACCCACAAAGACAAGACTCGTTGAAAAGGAGAGGGCAACAACAAACTATGGGGGTAGCTTCAAATTCTTCTTCTTTAGCTTTCTACGGTAATAATAATAACAATTACAATTCCACAAACAAATTCCGAGGCTTTCTTGGGGATGACGATGATCTAGTGTCAACAGTAGTTCCTGCAGTGACAGTGGTGCTTGAAGGCCGTTCGATCTGTCAACGCATCAGCCTCCATAATCACTCTAGCTATCAAAGTCTAGCAAAGGAACTTCGACAAATGTTTGTGGAAGGTAACGATGGAAACATGGAGAATGATGATAATCTTGATCTGTCAAATGCTATTCCTGGTCACCTCATTGCCTATGAAGACATGGAAAGTGATCTTCTTCTTGCTGGTGATCTTAGTTGGAAGGATTTTGTACGTGTTGCAAAGAGAATTCGAATAGTTCCAGCGAAGGGGAACCCAAGGAAAGCTACAACAAGTACATCAGAAGAAGCATACGTGAGATCACCTGCACAATTATTGTTTGGTTAA 540 0.4111 MNSFDPQRQDSLKRRGQQQTMGVASNSSSLAFYGNNNNNYNSTNKFRGFLGDDDDLVSTVVPAVTVVLEGRSICQRISLHNHSSYQSLAKELRQMFVEGNDGNMENDDNLDLSNAIPGHLIAYEDMESDLLLAGDLSWKDFVRVAKRIRIVPAKGNPRKATTSTSEEAYVRSPAQLLFG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0368 179 Gene3D - 58 165 - -
Lan1g0368 179 MobiDBLite consensus disorder prediction 1 25 - -
Lan1g0368 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA33 1 160 - -
Lan1g0368 179 SUPERFAMILY CAD & PB1 domains 74 150 - -
Lan1g0368 179 Pfam AUX/IAA family 58 151 IPR033389 -
Lan1g0368 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 160 IPR003311 GO:0005634|GO:0006355
Lan1g0368 179 ProSiteProfiles PB1 domain profile. 61 155 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0368 Lan-Chr1 2852835 2854362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0368 65 151 B3 DNA Binding Superfamily AT1G19220 31.034 2.39e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan1g0368 AUX_IAA 1e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0368 - - ahf:112698078 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0368 1 2852835 2854362 Lan1g0368 1 2852835 2854362 ECH
Lan12g1041 12 17065388 17067095 Lan1g0368 1 2852835 2854362 LSH