Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0360 ATGAACTTCCATCAGCCTAATACTTCTCTTCACCTAAGGCAACCTGATGAGAACAATTCACTCAATCTAGATCTTCTCCTTGACCCTTCTTCCTCTTCTTCATCATCACCTCCTACTAGTGCAATGGAACTTAGGATATTCTCATGCAACTATTGTCAGAGAAAGTTTTACAGTTCACAAGCTTTGGGAGGCCACCAAAATGCTCATAAGCTGGAAAGGACTCTAGCCAAGAAGAGTAGGGAGCTGAGTTCAGCCATGCAAACTTATAGAGGAGGACAAGAACAAAGACCAAACTTCAGTGCTAATTCACACCAACAACACCATCTTGGTCGTGCTCTTCTGGTCATGGAAAACCAAGGACAAGTCATGAGGAGAGAGTTTAGCTATGGTTCCAAAGAAGGGGTGCCTTCTTGGTCACGTGGCTATACTAATGAAAATAATGTTCAAGAAGATGTTAGCCAACTTGACTTGTCTTTAAGGCTTTGA 486 0.4239 MNFHQPNTSLHLRQPDENNSLNLDLLLDPSSSSSSSPPTSAMELRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQTYRGGQEQRPNFSANSHQQHHLGRALLVMENQGQVMRREFSYGSKEGVPSWSRGYTNENNVQEDVSQLDLSLRL* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0360 161 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Lan1g0360 161 Gene3D Classic Zinc Finger 32 107 - -
Lan1g0360 161 PANTHER ZINC FINGER PROTEIN JAGGED 4 161 IPR045320 GO:0003700
Lan1g0360 161 PANTHER BNAC02G44440D PROTEIN 4 161 - -
Lan1g0360 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Lan1g0360 161 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Lan1g0360 161 Coils Coil 68 88 - -
Lan1g0360 161 MobiDBLite consensus disorder prediction 82 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0360 Lan-Chr1 2732222 2733304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0360 4 82 C2H2 Transcription Factor Family AT5G57520 68.235 6.63e-27 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g0360 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0360 - - gmx:100778014 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0360 1 2732222 2733304 Lan1g0360 1 2732222 2733304 ECH
Lan12g1049 12 17117855 17119640 Lan1g0360 1 2732222 2733304 LSH
Lan1g1217 1 22056136 22057135 Lan1g0360 1 2732222 2733304 LSH