Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0355 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAATGTTAAGAAAGGACCTTGGTCTCCTGAAGAGGATGCTGCACTCAAAGACTACATTGAAAAAAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAGAAAATAGGGCTCAAAAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTGAATTACTTGAGACCTAATATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACATCATATGCAGTCTTTACATTAGCATTGGCAGCAGATGGTCCATTATTGCAGCACAACTATCTGGAAGAACCGATAATGATATCAAGAATTATTGGAATACAAGATTGAAGAAGAAACTGCTGGGAAGGCACAAACAATCTAACTTCAACACAAAAGAAACAAACGGGACAGACGATAATTCATCAAATTCCCTAAGCAGTTCTGCTCTTGAAAGACTTCAATTGCATATGCAACTTCAAAGCCTTCAAAACCCTTTTTCTTTCTACAGTAATCCATCACTGTGGCCTAAGTGGCATCCGTCCCAAGAAAAGATGATTCAGCAATCTTTGAAAGATGCCTCTAACTCTAACACTGTTGTGATGCAAGGACAAAAATATGAGTTTGACAAACCAACTAATATTGTTAGTGGTTTTCTTCAACAAGATATTGGCGCAAATATGAATACCCTAAAGGTTGAGAATCCTTTGAACAACAATTCAGTTCCCTTTGCTAATTCTGGGAATAATCTTCCAATGCATTCATCAAGTATTGTTGACCAAACTAATAGTATGGGATTTCAGCAAGTTTGTGCACTGCAAATAACTGAACATGATAACATTCTCAACAACAAAATTACAATGGGTAATTACTTGCCACAGGAACAACAGAATATGGCTGGATTTGATTGTTTCAGAGAGATGAATGGTTCAAATGACAATAGCAACTTGATTTGGTGGTCCAATGATTCTGATTCAAAGTCAGCATCAACAAGCTCTTGGGATTCATCAACTACTCCAGTTCTTATGCCAGAAGGAATGTTCCATGATTATGAACTAGGTTACAGTTTCTAG 1062 0.3814 MGRAPCCDKANVKKGPWSPEEDAALKDYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLSGRTDNDIKNYWNTRLKKKLLGRHKQSNFNTKETNGTDDNSSNSLSSSALERLQLHMQLQSLQNPFSFYSNPSLWPKWHPSQEKMIQQSLKDASNSNTVVMQGQKYEFDKPTNIVSGFLQQDIGANMNTLKVENPLNNNSVPFANSGNNLPMHSSSIVDQTNSMGFQQVCALQITEHDNILNNKITMGNYLPQEQQNMAGFDCFREMNGSNDNSNLIWWSNDSDSKSASTSSWDSSTTPVLMPEGMFHDYELGYSF* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0355 353 CDD SANT 71 113 IPR001005 -
Lan1g0355 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan1g0355 353 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan1g0355 353 Gene3D - 69 142 - -
Lan1g0355 353 Gene3D - 7 68 - -
Lan1g0355 353 PANTHER OS09G0431300 PROTEIN 1 307 - -
Lan1g0355 353 CDD SANT 16 62 IPR001005 -
Lan1g0355 353 SMART sant 13 64 IPR001005 -
Lan1g0355 353 SMART sant 67 115 IPR001005 -
Lan1g0355 353 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan1g0355 353 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan1g0355 353 MobiDBLite consensus disorder prediction 120 142 - -
Lan1g0355 353 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan1g0355 353 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan1g0355 353 MobiDBLite consensus disorder prediction 124 142 - -
Lan1g0355 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan1g0355 353 PANTHER OS09G0431300 PROTEIN 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0355 Lan-Chr1 2677985 2680226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0355 1 347 MYB Transcription Factor Family AT5G57620 49.728 1.32e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan1g0355 Myb_DNA-binding 3.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0355 K09422 - gmx:778083 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0355 1 2677985 2680226 Lan1g0355 1 2677985 2680226 ECH
Lan12g1061 12 17189608 17191352 Lan1g0355 1 2677985 2680226 LSH