Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0351 ATGGGAATTGAGGAGGGAGGAATTAATCTAAAGGGCTTGAGGAGTGGCTGGAGTGTGCCGCCGAAGCTATGTGACTGTTGTAAGTTAGCTTCGGCTGCTCTCTTCTGCCACTCTGATTCGGCTTTTTTATGCATAGCCTGCGATTCCAAAATTCACTCTGTGAATAAACTTTCTTCACGCCACGAGCGCGTGTGGATGTGTGAGGTTTGTGAGCAAGCACCTGCTGCGGTCACGTGCAAGGCAGATGCTGCTGCCCTCTGCGTCACGTGCGATTCAGATATCCACTCCGCCAACCCACTCGCCCAACGCCACGACCGTGTCGCGGTGGAACCTTTCTTCGATTCTGCTGAGTCCATCGTTAAAGCTTCCGCTGCTAATTTCATGTTTGCGGTTCCCACCGACGATGCTGTTGCGTCCAACGGGTACAACCAGGATGATTCATGGGTCATTCCGAATCCGAATTATGGGTCCAAAATCATCGACGCCCCTGATATAAAATCAAGGGAAATGTTCTTCTCTGAAATGGACCCCTTTATTGATTTCGATAACTCAAATAATTTCTTTCATAATGGAAACGATAGTGTTGTTCCTGTTCAAAACAAACCCGTTCCTGTTATGAACCATAATCCCTCAGAGGCTTGCTTTGATATCGATTTTTGTAGATCAAAGCTCTCTTCTTTCAACTACCCATCTCATTCTATAAACCAAAGTGTTTCTTCTTCTGATGTTGGAGTGGTTCCAGATAAGAACACGGTTTCAGAGATATCGTACTCTTTCGGAATCAACAGTTCAGATTCGAGTGGTATGGTTTCAGGGGGTAATAGCCAGAACCAAGCGACGCAGTTATGTGGGATGGATCGTGAAGCGAGGGTGCTGAGGTATAGAGAGAAGAGAAAGAATCGTAAGTTCGAGAAGACTATTCGTTATGCTTCACGAAAGGCTTATGCTGAAACCCGGCCCAGAATTAAAGGTCGGTTCGCTAAACGAGCTGAACTTGAGTCAGATGTGGATCATCTTTATAGTTCCTCTAATGATGTTGTTTCTGTTCCTGCAACTTTCATGCTGGACACTCACTACGGCGTCGTACCGTCCTTCTAG 1098 0.4636 MGIEEGGINLKGLRSGWSVPPKLCDCCKLASAALFCHSDSAFLCIACDSKIHSVNKLSSRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHDRVAVEPFFDSAESIVKASAANFMFAVPTDDAVASNGYNQDDSWVIPNPNYGSKIIDAPDIKSREMFFSEMDPFIDFDNSNNFFHNGNDSVVPVQNKPVPVMNHNPSEACFDIDFCRSKLSSFNYPSHSINQSVSSSDVGVVPDKNTVSEISYSFGINSSDSSGMVSGGNSQNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAELESDVDHLYSSSNDVVSVPATFMLDTHYGVVPSF* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0351 365 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Lan1g0351 365 SMART bboxneu5 19 66 IPR000315 GO:0008270
Lan1g0351 365 SMART bboxneu5 67 109 IPR000315 GO:0008270
Lan1g0351 365 CDD Bbox1_BBX-like 67 109 - -
Lan1g0351 365 ProSiteProfiles CCT domain profile. 287 329 IPR010402 GO:0005515
Lan1g0351 365 Pfam B-box zinc finger 64 108 IPR000315 GO:0008270
Lan1g0351 365 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Lan1g0351 365 CDD Bbox1_BBX-like 23 66 - -
Lan1g0351 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 11 365 - -
Lan1g0351 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 365 IPR045281 GO:0009909
Lan1g0351 365 Pfam CCT motif 287 329 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0351 Lan-Chr1 2647601 2649335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0351 1 365 C2C2-CO-like Transcription Factor Family AT5G57660 52.591 3.77e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan1g0351 zf-B_box 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0351 - - gmx:100805693 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0351 1 2647601 2649335 Lan1g0351 1 2647601 2649335 ECH
Lan12g1066 12 17211350 17213034 Lan1g0351 1 2647601 2649335 LSH