Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0345 ATGCTTTCGGGATCTTGTGTGAGTCTATTGAATTTGGTATCACATGATGATTACCAAGTTTCTAATGTAATGGCGGTTACACCAGAGTTCGAGATCGCTCATGCCAACAACGACCGTTCAAATTCAGGATCCGACGATGTCGTTTCAAACTCCTCAACCGAACGAAGAATCATCGTCGCGAACCAGTTACCTATTCGCGCATCACGCGACGCGGAAACAAAGAAATGGTCTTTCGAATTCGACAGTGATAGTTTGGTTCTTCAGCTCAAAGACGGGTTCCCCTCCGACACGGAGGTTCTCTACGTCGGTTCCTTAAACGCCGACGTCGAATTTTCCGAACAGGATGACGTGGCGCAAATCTTGTTAGAGAAATTCCGTTGCGTTCCAACGTTCATCCCTAGAGAAGTTCATAACCGTTTCTACCATGGGTTCTGCAAGCATTACTTGTGGCCTATTTTTCACTACATGCTTCCTCTTTCACCGATCCATGGTGCACGCTTCGAACTTTCTCAGTGGCTAGCGTACGTTTTGGCTAACAAGATCTTCGCGGATAAAGTAACCGAGGTGATAAATCCTGACGAGGATTACGTTTGGGTCCACGATTATCATCTCATGATCTTGCCCACTTTTTTGAGGAAGCGTTTTCACCGTGTCAAGCTTGGGTTTTTCTTGCACGGGCCGTTTCCTTCGTCGGAAATCTATAGAACTATACCAGTTCGTGATTATATCCTTCGCGCCTTTCTGAATTGTGATTTGGTGGGGTTTCATACTTTTGATTACGCAAGGCATTTTTTGTCTTGTTGTAGCAGGATGTTGGGGTTGGATTACGAGTCAAAGAGGGGATATATTGGTTTAGATTATTATGGTAGAACTGTTACTATTAAGATTTTACCGGTTGGGATTCACATGGGTCAACTTGAATCTGTTTTGTCTTTGTCTGAGACTGCAAAGAGGGTTAAGGAGTTGAAGGAGGACTATGAGGGCAAAATTGTGATTTTGGGTGTAGATGACATGGATTTGTTTAAAGGTATTAGTTTGAAGTTTTTAGCAATGGGGCAACTTTTGGAGGTGCACCATGATTTGAGGGGTAGAGTGGTTTTGGTTCAGATTCTTAACCCTGCAAGGAGCAGTGGGAAGGATATTCAGGATGTTGAGGATGAGACTAAGGCTATTGCTAGGGAGATTAATGAGAAGTATGGTGAACCTGGGTATCAGCCAATTGTTGTCATCAATGGCCTTGTCTCGACTCAGGAGAAAGCTGCATACTACGCTATTGCTGAGTGTTGTGTTGTGAATTGTGTTAGAGATGGAATGAATTTAGTGCCCTATACGTACACTGTCTGCAGACAGGCAAGGGTAGCATTGGACAAGGCTCTTGATCTTGAAGATGAGGTTGTGAGACCTCAACAGAGTGTTATAATTGTTTCTGAGTTCATCGGTTGCTCACCATCTCTAAGCGGAGCAATTCGAGTGAATCCTTGGAACATTGATGATGTGTCTGTGGCTATGACTTCAGCTATCAAAATGTCGGAGGCTGAGAAGCATTTGCGCCACGAGAAGCATTATAAGTATATAAGCTCTCATGATGTGGCATATTGGGCTAGGAGTTTTGATCAGGATTTGGAGAGAGCTTGTAGAGAGCATTACCGCAAGAGGTGTTGGGGTGTTGGATTTGGTTTGGGATTCAGAATCATTGCTTTGGATCCTACTTTTAGGAAGCTTTCGGTGCAAAATATTGTCTCTGCCTATACTCGAACGCAGAATCGGTTGATCCTTTTGGACTATGATGGCACCATGATGCCACAGGCCTCAATAGATAAAACTCCTAGCAGGAAAGTTGTCTCTGTGCTGAACCATTTATGCAGTGATCCAAACAATATAGTCTTCATTGTAAGTGGCAGGGATAAGGATTGCCTAAGCAAGTGGTTTTCTCCATGTGAGAAATTGGGTCTCTCTGCCGAGCATGGTTATTTCACTAGGTGGAGTAGGGATTCTCCATGGGAGACATGTGGATTAAATAAGGACTTCGATTGGAAAAATATTGCAGAGCCCGTGATGGCTCACTATACAGAAGCAACTGATGGTTCTTTCATTGAACAGAAAGAAAGCGCAATGGTTTGGCATCATCAAGAAGCTGATCCTCATTTTGGATCCAGCCAAGCAAAAGAGCTTCTTGATCACCTGGAGAGTGTGCTGGCCAATGAGCCAGTAGTGGTTAAGAGGGGACAACACATAGTTGAAGTGAAACCTCAGGGTGTGAGCAAAGGTATAGTTGTTGAAAACCTTATCTCAACCATGAGAAAGAAGGGAAAGTCACCAGATTTTCTGCTATGCATAGGAGATGATCGTTCAGATGAAGATATGTTTGAGAGCATTGCTAGTTCAGTTTCTAATGCAGCACTGCCAACTATTTCACAAGTGTTTGCATGCACTGTTGGTCAGAAACCAAGCATGGCAAAATACTATTTGGATGATACTAGTGAAGTTATCAATTTGCTGGAAGGAATTGCAACTGCATCAGCGGCAACAACAACATGA 2538 0.4354 MLSGSCVSLLNLVSHDDYQVSNVMAVTPEFEIAHANNDRSNSGSDDVVSNSSTERRIIVANQLPIRASRDAETKKWSFEFDSDSLVLQLKDGFPSDTEVLYVGSLNADVEFSEQDDVAQILLEKFRCVPTFIPREVHNRFYHGFCKHYLWPIFHYMLPLSPIHGARFELSQWLAYVLANKIFADKVTEVINPDEDYVWVHDYHLMILPTFLRKRFHRVKLGFFLHGPFPSSEIYRTIPVRDYILRAFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLESVLSLSETAKRVKELKEDYEGKIVILGVDDMDLFKGISLKFLAMGQLLEVHHDLRGRVVLVQILNPARSSGKDIQDVEDETKAIAREINEKYGEPGYQPIVVINGLVSTQEKAAYYAIAECCVVNCVRDGMNLVPYTYTVCRQARVALDKALDLEDEVVRPQQSVIIVSEFIGCSPSLSGAIRVNPWNIDDVSVAMTSAIKMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLERACREHYRKRCWGVGFGLGFRIIALDPTFRKLSVQNIVSAYTRTQNRLILLDYDGTMMPQASIDKTPSRKVVSVLNHLCSDPNNIVFIVSGRDKDCLSKWFSPCEKLGLSAEHGYFTRWSRDSPWETCGLNKDFDWKNIAEPVMAHYTEATDGSFIEQKESAMVWHHQEADPHFGSSQAKELLDHLESVLANEPVVVKRGQHIVEVKPQGVSKGIVVENLISTMRKKGKSPDFLLCIGDDRSDEDMFESIASSVSNAALPTISQVFACTVGQKPSMAKYYLDDTSEVINLLEGIATASAATTT* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0345 845 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Lan1g0345 845 SUPERFAMILY HAD-like 589 836 IPR036412 -
Lan1g0345 845 CDD GT20_TPS 55 542 IPR001830 GO:0003824|GO:0005992
Lan1g0345 845 Gene3D Glycogen Phosphorylase B; 308 526 - -
Lan1g0345 845 Pfam Trehalose-phosphatase 592 827 IPR003337 GO:0003824|GO:0005992
Lan1g0345 845 Gene3D - 717 845 IPR023214 -
Lan1g0345 845 Gene3D - 588 707 IPR023214 -
Lan1g0345 845 TIGRFAM T6PP: trehalose-phosphatase 588 837 IPR003337 GO:0003824|GO:0005992
Lan1g0345 845 Pfam Glycosyltransferase family 20 55 542 IPR001830 GO:0003824|GO:0005992
Lan1g0345 845 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 55 546 - -
Lan1g0345 845 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED 1 842 - -
Lan1g0345 845 Gene3D Glycogen Phosphorylase B; 47 307 - -
Lan1g0345 845 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 590 792 IPR006379 -
Lan1g0345 845 CDD HAD_TPP 590 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0345 Lan-Chr1 2561488 2564774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0345 10 843 Trehalose Biosynthesis Gene Families AT2G18700 69.212 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0345 K16055 - gmx:100810498 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1073 12 17278188 17281545 Lan1g0345 1 2561488 2564774 LSH