Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0295 ATGGCATTGGCTGGTACTGGAGTGTTTTCAGAGACTTTTGATGGAGATGTGTACAAATACTATGCTGATGGAGAATGGAAGAAATCTTCTTCTAACAAAAGTGTTGCTATCATCAACCCAACTACCAGAAAGACTCAATACAAAGTTCAAGCATGTTCACAAGAGGAGGTTAATAAGGTAATAGATTCAGCAAAATCTGCACAAAAGTTATGGGCAAAGACTCCACTATGGAAAAGAGCTGAACTTCTTCATAAGGCTGCTGCTATTCTCAAAGAGAACAAAGCTCCAATTGCTGAGTGCCTAGTTAAGGAAATAGCAAAACCAGCCAAAGATGCAGTAACAGAGGTTGTAAGATCTGGTGATCTTATTTCTTACTGTGCTGAAGAAGGAGTGAGGATTTTGGGAGAGGGAAAGTTCTTAGTATCTGATAGTTTTCCAGGAAATGAAAGGACAAAGTATTGCCTCACATCTAAGATTCCATTAGGAGTGGTTTTAGCCATTCCACCTTTTAATTATCCTGTCAATCTCGCCGTCTCGAAAATTGCCCCTGCACTTATCGCTGGAAATTCCATTGTGCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCTTTGCACATGGTTCATTGCTTTCACTTAGCTGGTTTTCCCAAAGGCCTAATCAGTTGTGTAACTGGCAAAGGATCTGAGATTGGTGACTTCCTTACATTGCATCCAGGAGTGAATTGTATAAGCTTCACTGGTGGAGATACTGGAATTGCAATTTCAAAGAAGGCAGGTATGATTCCTCTTCAAATGGAATTAGGAGGAAAAGATGCATGCATTGTACTTGAAGATGCTGACCTGGATTTGGTGGCTGCAAACATTATAAAGGGAGGTTTTTCATACAGTGGTCAGAGGTGCACTGCAGTTAAAGTTGTCCTGGTAATGGAATCTGTGGCTGATGCTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAGCTAAGTGTTGGACCACCAGAGAACGACAGTGACATCACACCGGTTGTGTCAGAATCATCGGCCAATTTCATCGAAGGTCTAGTCTTAGATGCTAAACAGAAAGGTGCAACATTCTGCCAAGAGTACAAAAGAGAAGGTAATCTCATTTGGCCTTTGCTATTGGATAATGTTAGGCCTGACATGAGAATTGCATGGGAAGAGCCATTTGGACCAGTTTTGCCAGTAATTAGGATCAGTTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGATATCAACAAAGCAATGTTGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAATTCTGCTCCAGCTCGTGGACCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGAATTGGATCTCAAGGAATTACCAACAGCATAAACATGATGACCAAGATCAAAACCACTGTGATCAACTTACCCAGCCCTTCTTATACAATGGGCTAG 1497 0.4175 MALAGTGVFSETFDGDVYKYYADGEWKKSSSNKSVAIINPTTRKTQYKVQACSQEEVNKVIDSAKSAQKLWAKTPLWKRAELLHKAAAILKENKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTLHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLSVGPPENDSDITPVVSESSANFIEGLVLDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0295 498 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 293 304 IPR016160 GO:0016491
Lan1g0295 498 SUPERFAMILY ALDH-like 17 489 IPR016161 GO:0016491
Lan1g0295 498 CDD ALDH_F11_NP-GAPDH 17 489 - -
Lan1g0295 498 PANTHER ALDEHYDE DEHYDROGENASE 3 498 - -
Lan1g0295 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 485 IPR016162 GO:0016491
Lan1g0295 498 Pfam Aldehyde dehydrogenase family 26 485 IPR015590 GO:0016491
Lan1g0295 498 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Lan1g0295 498 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 498 - -
Lan1g0295 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 459 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0295 Lan-Chr1 2157222 2165307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0295 3 498 Aldehyde Dehydrogenase Gene Family AT2G24270 90.323 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0295 K00131 - gmx:100789100 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1105 12 17509094 17511020 Lan1g0295 1 2157222 2165307 LSH