LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g0295	ATGGCATTGGCTGGTACTGGAGTGTTTTCAGAGACTTTTGATGGAGATGTGTACAAATACTATGCTGATGGAGAATGGAAGAAATCTTCTTCTAACAAAAGTGTTGCTATCATCAACCCAACTACCAGAAAGACTCAATACAAAGTTCAAGCATGTTCACAAGAGGAGGTTAATAAGGTAATAGATTCAGCAAAATCTGCACAAAAGTTATGGGCAAAGACTCCACTATGGAAAAGAGCTGAACTTCTTCATAAGGCTGCTGCTATTCTCAAAGAGAACAAAGCTCCAATTGCTGAGTGCCTAGTTAAGGAAATAGCAAAACCAGCCAAAGATGCAGTAACAGAGGTTGTAAGATCTGGTGATCTTATTTCTTACTGTGCTGAAGAAGGAGTGAGGATTTTGGGAGAGGGAAAGTTCTTAGTATCTGATAGTTTTCCAGGAAATGAAAGGACAAAGTATTGCCTCACATCTAAGATTCCATTAGGAGTGGTTTTAGCCATTCCACCTTTTAATTATCCTGTCAATCTCGCCGTCTCGAAAATTGCCCCTGCACTTATCGCTGGAAATTCCATTGTGCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCTTTGCACATGGTTCATTGCTTTCACTTAGCTGGTTTTCCCAAAGGCCTAATCAGTTGTGTAACTGGCAAAGGATCTGAGATTGGTGACTTCCTTACATTGCATCCAGGAGTGAATTGTATAAGCTTCACTGGTGGAGATACTGGAATTGCAATTTCAAAGAAGGCAGGTATGATTCCTCTTCAAATGGAATTAGGAGGAAAAGATGCATGCATTGTACTTGAAGATGCTGACCTGGATTTGGTGGCTGCAAACATTATAAAGGGAGGTTTTTCATACAGTGGTCAGAGGTGCACTGCAGTTAAAGTTGTCCTGGTAATGGAATCTGTGGCTGATGCTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAGCTAAGTGTTGGACCACCAGAGAACGACAGTGACATCACACCGGTTGTGTCAGAATCATCGGCCAATTTCATCGAAGGTCTAGTCTTAGATGCTAAACAGAAAGGTGCAACATTCTGCCAAGAGTACAAAAGAGAAGGTAATCTCATTTGGCCTTTGCTATTGGATAATGTTAGGCCTGACATGAGAATTGCATGGGAAGAGCCATTTGGACCAGTTTTGCCAGTAATTAGGATCAGTTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGATATCAACAAAGCAATGTTGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAATTCTGCTCCAGCTCGTGGACCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGAATTGGATCTCAAGGAATTACCAACAGCATAAACATGATGACCAAGATCAAAACCACTGTGATCAACTTACCCAGCCCTTCTTATACAATGGGCTAG	1497	0.4175	MALAGTGVFSETFDGDVYKYYADGEWKKSSSNKSVAIINPTTRKTQYKVQACSQEEVNKVIDSAKSAQKLWAKTPLWKRAELLHKAAAILKENKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTLHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLSVGPPENDSDITPVVSESSANFIEGLVLDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG*	499

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan1g0295	498	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	293	304	IPR016160	GO:0016491
Lan1g0295	498	SUPERFAMILY	ALDH-like	17	489	IPR016161	GO:0016491
Lan1g0295	498	CDD	ALDH_F11_NP-GAPDH	17	489	-	-
Lan1g0295	498	PANTHER	ALDEHYDE DEHYDROGENASE	3	498	-	-
Lan1g0295	498	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	24	485	IPR016162	GO:0016491
Lan1g0295	498	Pfam	Aldehyde dehydrogenase family	26	485	IPR015590	GO:0016491
Lan1g0295	498	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	265	272	IPR029510	GO:0016491
Lan1g0295	498	PANTHER	NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	3	498	-	-
Lan1g0295	498	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	269	459	IPR016163	GO:0016620

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g0295	Lan-Chr1	2157222	2165307	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g0295	3	498	Aldehyde Dehydrogenase Gene Family	AT2G24270	90.323	0.0	943

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g0295	K00131		-	gmx:100789100	944.88

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan12g1105	12	17509094	17511020	Lan1g0295	1	2157222	2165307	LSH

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