Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0280 ATGGGTTCAGGTTCTAGTAGACTTGGGTCTCCTCAATCATCTACACCCAGAGACAGGTTCAACCACACCCCTCGTTTTACACCTTCCTCTTTTCTTCGCGGTTCCTCCACCTATCAGGTGGAAGAACATCCATCTGAACCTCAGGTAGATTCAGCAATAGAATTTGAAAATGAAATGTATAAAGTCACTGAGGAATCATCTTTATTGTGTACAGAAGCTAGAATTAGCCGCAGTACATGTGCTGAAACCGCCACCTCATCTGATACCAGAACTGAGTTCTATGGAAATGCTACTGTTGAAGGTTCTTCCAGAAATGTTCCAGCAACTAGTCAGACGACGTGTTTATCTGAATTTGAGGAGCTAGCCCTACCTTATCAGGTAAGTGCTGGTCATAATCACCATGAATCATATAGGGATATTAGCAACACAGATAGTACTTCATTTGTAGAACAGCCATCTTCAGATCCAGTCTCTGTGAATGTTTCTGCTAACGAAGGTGTAGTCAATGATGTTGATGATCCAGTGGTTAGTGGTGGCTCTCAAATCTCTCGCGAGACATTGCATCCAAGGAATTCCACCCTTCAAGAGCATGGAAATTCAAGTTCTGGTGAAATCTCTGTTGAGAATCACACCGCTGCATTCCTAGCTACCCATGATTCTTCCAGTCCTGTTGCTCAAGCTTCAAACTTACCAGAAAATTCTCAATTACCAGAAGAAGAATCACGTCAGGAGACGATCCCTTCAGGTTTAGGTATTCTCGTGTCCAATCGGGAAAGAGGGCAAGGAAATGATGGTGTGCTTCAAGTTGATGTGGTCGCAATATCTTCCAGCATGTTGTCTGGCAGCAATGCTGATGTCAATGATCATGATTCCAGAAGGAGTCGTAGAAGATTATTTTGGGATGCCTTTTCAGGACGTAGTTCTAGAGGACTTGGTGATTCTACGACAATGATCTTCTCTGCTGGTGGTGCCGATGATCCAGAATCTCGGGATCGATGGCTTGTTGATTTTGGTGGTGACTTCTTAAATAATAGGGTTCGAGGTTCTCCTGGCTATATGGGCAGTAGAATTCACAGATTGAATGGACGAATGCGGCACTCAAGATCTGAGGTCTGGGAAAGGCTTCGTGGCGGCCTTGATGAGATTGGTCAGTTAAATTCTTCCTGTCCACTAGGACTCCATGCAGATGGTATGTGCTCATGTGAGTCTTCCCCAATAGCTGAGGAATCTAGCACTCGAGCAAGTATATATAGAATAGTCATGCTCGCAGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCCCTATCAATGGTCTCACTCCCTGCACCTGAATCAATTGTTGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGTAGCTAATGGTAGCAATGACACTGAACAATGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAATATCACATGATGTGTGTTGATAAGTGGCTTAAAGAAATACACGGTGTATGCCCTCTTTGTCGTAGCAATGTTTGTGGAGGATTAGCGGAGTCTGCTGCCGACTCAGAAATGCCATTACATTGA 1617 0.4409 MGSGSSRLGSPQSSTPRDRFNHTPRFTPSSFLRGSSTYQVEEHPSEPQVDSAIEFENEMYKVTEESSLLCTEARISRSTCAETATSSDTRTEFYGNATVEGSSRNVPATSQTTCLSEFEELALPYQVSAGHNHHESYRDISNTDSTSFVEQPSSDPVSVNVSANEGVVNDVDDPVVSGGSQISRETLHPRNSTLQEHGNSSSGEISVENHTAAFLATHDSSSPVAQASNLPENSQLPEEESRQETIPSGLGILVSNRERGQGNDGVLQVDVVAISSSMLSGSNADVNDHDSRRSRRRLFWDAFSGRSSRGLGDSTTMIFSAGGADDPESRDRWLVDFGGDFLNNRVRGSPGYMGSRIHRLNGRMRHSRSEVWERLRGGLDEIGQLNSSCPLGLHADGMCSCESSPIAEESSTRASIYRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDVANGSNDTEQCYICLAEYEEGDQIRVLPCNHEYHMMCVDKWLKEIHGVCPLCRSNVCGGLAESAADSEMPLH* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0280 538 MobiDBLite consensus disorder prediction 179 204 - -
Lan1g0280 538 MobiDBLite consensus disorder prediction 221 242 - -
Lan1g0280 538 CDD mRING-H2-C3H2C2D_ZSWM2 476 519 - -
Lan1g0280 538 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 536 - -
Lan1g0280 538 MobiDBLite consensus disorder prediction 1 48 - -
Lan1g0280 538 SUPERFAMILY RING/U-box 464 522 - -
Lan1g0280 538 MobiDBLite consensus disorder prediction 134 157 - -
Lan1g0280 538 ProSiteProfiles Zinc finger RING-type profile. 477 519 IPR001841 -
Lan1g0280 538 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 536 - -
Lan1g0280 538 MobiDBLite consensus disorder prediction 169 204 - -
Lan1g0280 538 MobiDBLite consensus disorder prediction 221 245 - -
Lan1g0280 538 Pfam Ring finger domain 476 519 IPR001841 -
Lan1g0280 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 523 IPR013083 -
Lan1g0280 538 SMART ring_2 477 518 IPR001841 -
Lan1g0280 538 MobiDBLite consensus disorder prediction 1 44 - -
Lan1g0280 538 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0280 Lan-Chr1 2055128 2059904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0280 386 523 C3H Transcription Factor Family AT5G45290 52.288 7.41e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0280 - - gmx:100783604 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0280 1 2055128 2059904 Lan1g0280 1 2055128 2059904 ECH
Lan1g1160 1 21606281 21610361 Lan1g0280 1 2055128 2059904 LSH