Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0278 ATGTGTGCGAAGGAAAAGGGGGAGCAAGTTGCTCAAAATACAGAGAACATTGGTGACAGAAGGGTGTCATGGCCTTTGCATTGTGATATCTTGCATGCCCACATGGATAATTTGGAAAAAGACTCTACTTTTACAACTTCCATAGCAAATTCACTTCCTTTGGAAAGCATATGTGAGAATTCAGAAATTGCTGACAAAAAACAGAACCTGATGAGTTTTGTCCCGGTTCTTCGGTCTGGAGAGTGGTCAGATATTGGAGGTCGCCCTTACATGGAGGATACCCATATAAGCATTGGAGACTTGGCAAAGAAATTTGGTTATAACATGCTTTGTGAGGAAACTGTTTCATTATATGGTGTATTCGATGGCCATGGGGGGAAGAGTGCTGCACAATTCGTCCGCGATCACTTGCCAAGGTTGATTGTCGAGGATGCTGATTTTCCTTTCGAACTTAAGAAGGTAGTCACCAGGTCATTTTTAGAGACTGATGCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTGCCTATCTTCTGGTACAACTGCACTCACTGCAATTATATTTGGAAGGTCTCTACTTGTAGCGAATGCTGGAGACTGCCGAGCTGTTTTGTGCCATAGCGGAAAGGCTATAGAAATGTCGAAAGATCATAGGCCCTTTTGCATTAAAGAAAGGAAGCGAATAGAGTCCCTAGGTGGATTCGTGGATGATGGTTACCTAAATGGACTATTAGGCGTTACTCGTGCTTTAGGTAACTGGCATCTTGAAGGAATGAAGGAAAATAGTGGAAGAGGTGGACCATTGATCGCCGAGCCTGAAATTAAAATGGCAACATTGACCAAAGAAGACGAGTTACTGATAATTGGCAGTGATGGAATCTGGGATGTTTTTCGTAGCCAAAACGCTGTAGATTTTGCAAGAAGAAGGCTTCAAGAGCACAATGATGTGAAACAATGTTGCAAGGAAATAGTAGAGGAAGCAATAAAGAGAGGAGGAACAGATAACTTGACAGTTGTGATTGTATGTTTTCACCCCGATCCACCGCCGCCTGTTGTTGTAGAAAGGCCAAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATGCTTGCTAGAAGGATAA 1131 0.4271 MCAKEKGEQVAQNTENIGDRRVSWPLHCDILHAHMDNLEKDSTFTTSIANSLPLESICENSEIADKKQNLMSFVPVLRSGEWSDIGGRPYMEDTHISIGDLAKKFGYNMLCEETVSLYGVFDGHGGKSAAQFVRDHLPRLIVEDADFPFELKKVVTRSFLETDAEFAKTCSIESCLSSGTTALTAIIFGRSLLVANAGDCRAVLCHSGKAIEMSKDHRPFCIKERKRIESLGGFVDDGYLNGLLGVTRALGNWHLEGMKENSGRGGPLIAEPEIKMATLTKEDELLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIVEEAIKRGGTDNLTVVIVCFHPDPPPPVVVERPRVRRSISAEGLQNLKCLLEG* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0278 376 Gene3D - 59 346 IPR036457 -
Lan1g0278 376 Pfam Protein phosphatase 2C 90 335 IPR001932 -
Lan1g0278 376 CDD PP2Cc 78 343 IPR001932 -
Lan1g0278 376 ProSiteProfiles PPM-type phosphatase domain profile. 78 343 IPR001932 -
Lan1g0278 376 PANTHER PROTEIN PHOSPHATASE 2C 1 364 IPR015655 GO:0004722|GO:0006470
Lan1g0278 376 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Lan1g0278 376 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 364 - -
Lan1g0278 376 SUPERFAMILY PP2C-like 68 345 IPR036457 -
Lan1g0278 376 SMART PP2C_4 68 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0278 Lan-Chr1 2045090 2055370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0278 67 376 PP2C-type Phosphatase Gene Family AT2G25620 58.974 1.17e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lan1g0278 PP2C 3.1e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0278 K14803 - gmx:100782648 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0278 1 2045090 2055370 Lan1g0278 1 2045090 2055370 ECH
Lan12g1125 12 17634730 17637557 Lan1g0278 1 2045090 2055370 LSH
Lan1g0278 1 2045090 2055370 Lan15g0255 15 2900310 2904208 PCT
Lan15g0255 15 2900310 2904208 Lan1g0278 1 2045090 2055370 PCT