Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0276 ATGAGAGGAAATATAGTTGACAGTTTGTGGAGAATGGGAAGTAAGGCTACTGAAAAGATCCATAGCCATAGTGGCACCGAAAGCTCAGAACCCACTATTGAGATAAAGATAAAAACATTGGACTCACAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTTCCTGCTCTGAAAGAACAGATTGCGTCTGTAACTGGAGTGTTATCAGAGCAACAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTCTTGTCTGCTTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTCAGGCAACCTGGTTTACCACCACCTGGAAGTTTATTGAATCATTCAGTGCCGGACCCAAATTCAAGCACAAGCCATGGTCACAGCAATCAAGTAGCCCCTGGTGTATTTGTTGAAACTTTCAACGTGCCTGTTCAAGGAGATGAAATTTCTCCTGAATTTCATAGGGTTGTTTCTGCTGTTCTAGGATCTATTGGAATTCCAATGAGTGGCGGTGATGGGATTGATGTCAGGGAGCAGGATTCCCAAGGCCTTGGAAGAACTTCAGGTTCTAGTGGCACAACAGACTCAGCTCACCCTCAATCGGAACAATCTGGAATGCATATTTTGTATGATAGATTGCAAAATGTCTTCGGGCCTCCTTCTGCAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCGAATACCTGAGTCATATAAGCCATGAGTTTCATGCAATTGTCAGAGAAGGGGTGAACAATGGCCAAGCAGCTGAAGCTCATAGGACTGAAGAAATGGGATCCGTTTCTTCGCGGTTGGGTTCAACAATAGAAGGGCTCCCATCACCCGCATCCTTGGCAGAAGTTTTGTGTTCTAGTAGACAAATGATTGTTGAACAAGTTGGGGAGTGTCTACTTCAACTTGCAAGCCAGCTGGAGAACCAAGCAAATGTAGCTGATTCCTTGTTGCGGTCAAGTATTCAGTCTAGGACTATGAGGACCGGAGTTCTATTTTATAACCTTGGTGCATTTTTGCTTGAGCTTGGCCGCACAACAATGACAACACGTTTGGGTCAAACAGCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCCGGAGCAAGCTTTGGTGCCGTCCCTGTTGGCACTACACAGTCTAACTCAAGTTTAGGTAGTGGTCTTGGCTCTAGTTTTATCCCAAGGCGTATTGATATACAGATACGACGAGGTACATCAACAACCACACCCAATGCCAATCAAGAAGAGCGCAGTGATACACAGTCTGCTTCAGTTCAACTACATCAAGGTGGAAGTTCTGTTAATCAGTCAACCTCAAGGCGTCCAAATGCATCTATTGCTGGAGAGCCAGGAATAAGGGTAGTGCCAATTAGAACCATGGTTGCTGCCTTACCAGGTCCCATAGGTCGCTTCCCTTTAGAACAATCTGGTAATTCTATGGGGTTTTACTATCCAGTTCTTGGGAGAATGCAACCTGTATCATCTGGGCATGCAAATAGTGAACCGCGATCTCAACCACCAAGTCAGCATCGTGCTGCACAGCAATCAACTCTTGAATCCACATTGCAAAGGCAAAGCGTGCTTGATTCTGCAAGCAATGGATCCGTGTCAATGCCTAGCACAAGACAAGAGCCATCAAACTCTCGTGTTGTGAATATAAATATTCTGTCTGCTGGTGGGCCCCAAAACAACCAAGAATCTGAGAGCCAGACACCAAGCAGTGCGCTTCAGTTTTTAAGGGCACTCTTTCCTGGTGGAGAAATTCATGTTGAAGATTCTAGTATTCAAGGAACAGCTGCAGGTTCTACCTCAGAGCATGCTGCAACATCAGGTGGTTCTTCCCATGTCCCTGAAGCAGAACCTAGAGCTAGCGATGAAGGAATATTTTTGTCTAATGTACTTCGTGAGATCATGCCCCTCATATCTCAACGAGCAGGGTCTGGTGGAAATCCTTCAGTGGATCAAATGGCTCAAGATTCTTCTACCTTGGTTGAAAATGATGCTGGGACATCATCCGGAGAGAGTGGTTCTGAACAAGGCCTGCCAAATCCAAAACGTCAAAAGATGGAGTGA 2169 0.4537 MRGNIVDSLWRMGSKATEKIHSHSGTESSEPTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPGLPPPGSLLNHSVPDPNSSTSHGHSNQVAPGVFVETFNVPVQGDEISPEFHRVVSAVLGSIGIPMSGGDGIDVREQDSQGLGRTSGSSGTTDSAHPQSEQSGMHILYDRLQNVFGPPSAGSLQPPVIPDSLTTLSEYLSHISHEFHAIVREGVNNGQAAEAHRTEEMGSVSSRLGSTIEGLPSPASLAEVLCSSRQMIVEQVGECLLQLASQLENQANVADSLLRSSIQSRTMRTGVLFYNLGAFLLELGRTTMTTRLGQTASEAVVNGGPAVFISPSGPNHIMVQPLPFQPGASFGAVPVGTTQSNSSLGSGLGSSFIPRRIDIQIRRGTSTTTPNANQEERSDTQSASVQLHQGGSSVNQSTSRRPNASIAGEPGIRVVPIRTMVAALPGPIGRFPLEQSGNSMGFYYPVLGRMQPVSSGHANSEPRSQPPSQHRAAQQSTLESTLQRQSVLDSASNGSVSMPSTRQEPSNSRVVNINILSAGGPQNNQESESQTPSSALQFLRALFPGGEIHVEDSSIQGTAAGSTSEHAATSGGSSHVPEAEPRASDEGIFLSNVLREIMPLISQRAGSGGNPSVDQMAQDSSTLVENDAGTSSGESGSEQGLPNPKRQKME* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0276 722 MobiDBLite consensus disorder prediction 677 714 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 184 204 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 628 656 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 110 133 - -
Lan1g0276 722 ProSiteProfiles Ubiquitin domain profile. 33 108 IPR000626 GO:0005515
Lan1g0276 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 12 722 - -
Lan1g0276 722 Gene3D - 25 114 - -
Lan1g0276 722 SUPERFAMILY Ubiquitin-like 27 109 IPR029071 -
Lan1g0276 722 Pfam Ubiquitin family 35 105 IPR000626 GO:0005515
Lan1g0276 722 MobiDBLite consensus disorder prediction 437 476 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 172 204 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 525 581 - -
Lan1g0276 722 SMART ubq_7 33 104 IPR000626 GO:0005515
Lan1g0276 722 MobiDBLite consensus disorder prediction 675 722 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 437 479 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 628 643 - -
Lan1g0276 722 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 12 722 - -
Lan1g0276 722 MobiDBLite consensus disorder prediction 117 133 - -
Lan1g0276 722 PRINTS Ubiquitin signature 43 63 IPR019956 -
Lan1g0276 722 PRINTS Ubiquitin signature 64 84 IPR019956 -
Lan1g0276 722 PRINTS Ubiquitin signature 85 106 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0276 Lan-Chr1 2029601 2040174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0276 33 107 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 9.54e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0276 K23390 - gmx:100783070 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1127 12 17642883 17652294 Lan1g0276 1 2029601 2040174 LSH