Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0270 ATGGGTAAGAAAAAGAAGCAAGTAGGTGAAACAAGTGAAGATAATGGAAATCAAAGCAAAGTTGGAGATACAAGTCCCAAAGCATATGTAAGTGATGCTATGATATCTATGTCCATGTCTCAAGATTTGAAGGATGAGGGAAACAAGTTGTTTTGCAAGAGGGACCTTCAAGGAGCTTTAATGAAATATGAGAAAGCTCTCAAATTGCTTCCAACAAATCATGTAGGTGTGTCCAATCTGCGGAGTAGCATGGCTGCATGCTACATGCAGATGGGACTCGGCGAGTACCCAAGGGCAATTCATGAATGTGATTTGGCTCTCGAAATAACTCCGGATTATAGTTTAGCTCTGTTGAAGAGGGCAAGGTGCTATAAGGATTTAAATAGGTTGGATTTAGCTCTGAGAGATGTTAGCACTGTTGTGAAGATGGATCCAAGTAATGTTACGGCCTTGGATCTCTCAGAAAAAGTGAAAAATGCACTTGAGGAGAAAGGGTTAAGAGTAAACGATACGATAATTGAGTTGCCTCCGGATTATGCTGAGCCTCCTACTGCTTTGCCTCCACAAAAGGTAGTGAAAGAGAAGACACAAAAGAAGAAGACCAATAAAGAGAAGGCTCCTGATAACAAAATCCCAAAAAAGCAAGATGAGGAGAAATTTGAAGAGAAGAAGGCTGATGACAGTATTGTGAAGAAAAAGACCGATAAATTCAAAAAGAAGGCAAAGGAAAAAATTGACGTGAAGAAGGCTGGTATTAAAGAAGATGAAAAAAGCTATGATAGAGGGGGGAATGGACTTAAGAAAACTGCAAAACTTATTTTTGGTGAGGATATAAGGTGGGCTGAATTGCCTGTTAATTGCAGCTTCTTGCATCTAAGAGAAATTATTTGTGACCGATTCCCAAGTTTAGGATCCGTTCTTGTCAAATACATAGATCAAGAAGGTGATTTGGTTACAATCACCTCTGATGATGAATTGAGATGGGCTGAAACAGGAAATCAGGGTTCTATAAGGCTGTATGTAGTTGAAGCTAGTCCCGAGCAGGATCCTATGTTCGAGAAACTTAAAGTAAAGGTGGAGAAAAAGGTCGGGATTAATAATGGACCTGAGAATGGTTCCATGGTAAATGCAAAGGAAATTATTAGCTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCCAACCTGTTCAAGAACCATGTTGGATTTGAATCTGACAGGTATTTGGATTTTCATGATCTTGGGATGAAGCTATATTCCGAGGCTATGGAGGAGACAATTACAAGTGAAGAAGCACAAGACATACTTGACATAGCAGGAGATAAGTTCCAGGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTTCATATGTCTAGGGCAAGGAAGAAAGTATATTTCACAGAAGACTATTCTAAAGAACATCTATGTGAACAAATCAAAAGGTCGTATGAATGGGCAAAGAAAGAATATGCAAAAGCGGGAGAAAAATATGAAGCGGCCATTAAAATTAAGCCAGACTTTTATGAAGCCTTCCTGGCACTAGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCACTCAGCAGTGATGTAGATTTAGAATCATGGCCCTCCCCTGAGGTTCTTCAGCTTTACGAAAACTCGGAGAATAACATGGAGAAAGGAATGCTGATATGGGAAGAATTTGAAAAGCATCACTTGGGTAAAACATCTAATTCAAAGGATGTTAGATTACATTTGCAGAGCATGGGATTGGATGGTACATTTAAAACTATATCCTCAGATGACATTGCTGCACAGACGACAAATATTAAGTCTCAAATAAGTCTCCTATGGGGTACAATGCTATATGAACGTTCAATTGCAGAATTCAAATTACAGCTACCGGTCTGGCATGAATCTCTGGAATCTGCGGTTAAGAAGTTTGAAGATGTCGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTAGGATTTAAAATCGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAGAGTGGAGTTCCATCATTTCGTTTGGATCCTTTATTTAAGAGGCGAGTTCCAAAAGCTTATAACGCCTTCGAGTTTGCATGA 2166 0.3943 MGKKKKQVGETSEDNGNQSKVGDTSPKAYVSDAMISMSMSQDLKDEGNKLFCKRDLQGALMKYEKALKLLPTNHVGVSNLRSSMAACYMQMGLGEYPRAIHECDLALEITPDYSLALLKRARCYKDLNRLDLALRDVSTVVKMDPSNVTALDLSEKVKNALEEKGLRVNDTIIELPPDYAEPPTALPPQKVVKEKTQKKKTNKEKAPDNKIPKKQDEEKFEEKKADDSIVKKKTDKFKKKAKEKIDVKKAGIKEDEKSYDRGGNGLKKTAKLIFGEDIRWAELPVNCSFLHLREIICDRFPSLGSVLVKYIDQEGDLVTITSDDELRWAETGNQGSIRLYVVEASPEQDPMFEKLKVKVEKKVGINNGPENGSMVNAKEIISSSCIEDWIIQFANLFKNHVGFESDRYLDFHDLGMKLYSEAMEETITSEEAQDILDIAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDYSKEHLCEQIKRSYEWAKKEYAKAGEKYEAAIKIKPDFYEAFLALGQQQFEQAKLSWYYALSSDVDLESWPSPEVLQLYENSENNMEKGMLIWEEFEKHHLGKTSNSKDVRLHLQSMGLDGTFKTISSDDIAAQTTNIKSQISLLWGTMLYERSIAEFKLQLPVWHESLESAVKKFEDVGASPTDIAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKWQSGVPSFRLDPLFKRRVPKAYNAFEFA* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0270 721 MobiDBLite consensus disorder prediction 1 25 - -
Lan1g0270 721 CDD PB1 271 341 - -
Lan1g0270 721 PANTHER PROTEIN PHOX3 2 719 - -
Lan1g0270 721 Gene3D Tetratricopeptide repeat domain 37 167 IPR011990 GO:0005515
Lan1g0270 721 SMART tpr_5 114 147 IPR019734 GO:0005515
Lan1g0270 721 SMART tpr_5 40 73 IPR019734 GO:0005515
Lan1g0270 721 SMART tpr_5 78 113 IPR019734 GO:0005515
Lan1g0270 721 SUPERFAMILY TPR-like 41 524 IPR011990 GO:0005515
Lan1g0270 721 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Lan1g0270 721 Gene3D - 268 347 - -
Lan1g0270 721 ProSiteProfiles PB1 domain profile. 267 344 IPR000270 GO:0005515
Lan1g0270 721 Pfam PB1 domain 269 343 IPR000270 GO:0005515
Lan1g0270 721 SMART PB1_new 267 344 IPR000270 GO:0005515
Lan1g0270 721 MobiDBLite consensus disorder prediction 177 225 - -
Lan1g0270 721 SUPERFAMILY CAD & PB1 domains 268 354 - -
Lan1g0270 721 MobiDBLite consensus disorder prediction 192 225 - -
Lan1g0270 721 PANTHER PROTEIN CLMP1 2 719 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0270 Lan-Chr1 1984507 1987826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0270 - - lang:109354753 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1155 1 21563504 21567954 Lan1g0270 1 1984507 1987826 LSH
Lan1g0270 1 1984507 1987826 Lan15g0248 15 2800523 2804669 PCT
Lan1g0270 1 1984507 1987826 Lan3g0930 3 20393460 20398135 PCT
Lan15g0248 15 2800523 2804669 Lan1g0270 1 1984507 1987826 PCT
Lan3g0930 3 20393460 20398135 Lan1g0270 1 1984507 1987826 PCT