Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0257 ATGTCAACGAACCACTTCACTAATGAAGATTCAAACCGTCAACCGTTACTTTATTCTCAAAGATCCACTGTCAATTCATCGTCCCAGGTTGCCATCGTTGGTGCCAATGTCTCCCCTATTGAGAGCCTTGACTATGAGATTTTTGAGAACGAGTTCTTCAAGCAAGATTGGAGGAGCAGAGGGAAGGTTCAGATTTTTCAGTATATATTGGGGAAGTGGCTTTTGTGTTTAATCATTGGTTTGATCGTTAGCCTTATTGGGTTTTGCAATAATCTCGCTGTTGAGAATCTCGCTGGCATCAAGTTCGTTGTTACATCCAATATGATGTTGGAGAGGAGGTTTCTATTGGCATTTTTGGTATTTTTCGCTTCAAATTTGAGTCTCACGCTATTTTCCTCTATAATCACGGCTCTGATAGCACCTACAGCTACCGGTTCAGGTATACCAGAGGTGAAGGCTTACCTGAATGGCGTAGATGCACCTGGAATATTTACTTTACGAACTTTGTTTGTTAAGATTATTGGAAGTATCACAGCTGTTTCATCATCTCTTCTCATTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCATCATTGTTGGGTCAGGGCGGGTCAAAGAGATACGGGTTAACATGGAAATGGTTACGATTTTTTAAGAATGACCGAGATAGGCGAGATCTAATCATATGTGGATCTGCGGCTGGAATTGCTGCTGCTTTTCGTTCCCCTGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAACAGTTGCAATTATGCTTCGTGCCATGATTGATGTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCATATTCAGCAAGTATTTCGTATCATATAGGGGATGTTCCTCCTGTGTTTGTTCTTGCTGTTATAGGGGGTATACTTGGAAGCTTATATAATTTTTTGCTGAGCAAAGTTCTTCGCATATACAATTTCATCAACGAGAAAGGAACCATTTACAAAATAGTTCTTGCTTGCTTAATCTCCATTATTACCTCCTTTCTTCTTTTCGGATTGCCATGGTTCACATCTTGCCGACCTTGTCCTGCTGATGCAACTGAGCCCTGTCCTTCAATAGGTCGGTCTGGTAACTACAAAAAATTCCAATGCCCTCCTGATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGATGCTATCAGAAATCTACTCAGCAAGAACACCAATGATGAGTTTGAGTACTCATCAATGCTTATCTTTTTCATCACATGCTTCTTTTTAAGCATCCTAAGCTATGGAATTGTTGTCCCAGCCGGGCTTTTTGTGCCAATTATTGTGACTGGTGCATCTTATGGACGGTTTGTTGGAATGTTGGTTGGGGAAAGGTCCAATCTTAACCATGGCCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGATCTATGAGGTCGACAGTTTCACTGTGTGTAATTATTCTAGAGCTTACCAATAACTTGTTATTGCTACCCTTAATCATGATGGTGCTCTTGGTATCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGGTTTCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGTCGATGTAGTCACAGGACCTCTTCGGATTTTCAATGGCTTCGAGAAGGTTCGTAACATAGTTTTTGTGCTCAAAACTACTGGACACAATGGGTTTCCTGTTACTGATGAACCTCCAGTTTCTGAAGCTCCAGTTTTATTTGGTATTATCCTTCGTGATCATCTTCTGACATTGTTAAAGAAGAAAGCTTTCCAGTGCACACCAACAGAAATAAGTAACGATGCCTTAAAAAAGTTTTCAGCTGAGGATTTTGCAAAAAAAGGTTCAAGAGAAGGTGAAAAGATAGAAGATATACAGTTAACGGATGAAGAAATGGACATGTTCATAGATCTACATCCATTTACAAATGCTTCACCTTATACTGTCGTGGAGACGATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAAGTTGGTTTAAGGCACCTGCTTGTGGTACCCAAGATCTCCGGCAGATCACCTGTGGTGGGTATATTGACACGGCACGATTTCATGTCGGAACATATATTGGGTTTGTACCCTTTGCTGGTTAGAAATAAGTGGAAAAGATTGAGATTCCAGCTCCCTTGTGTGTGA 2301 0.4129 MSTNHFTNEDSNRQPLLYSQRSTVNSSSQVAIVGANVSPIESLDYEIFENEFFKQDWRSRGKVQIFQYILGKWLLCLIIGLIVSLIGFCNNLAVENLAGIKFVVTSNMMLERRFLLAFLVFFASNLSLTLFSSIITALIAPTATGSGIPEVKAYLNGVDAPGIFTLRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLIICGSAAGIAAAFRSPVGGVLFALEEMASWWRSALLWRAFFTAATVAIMLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHIGDVPPVFVLAVIGGILGSLYNFLLSKVLRIYNFINEKGTIYKIVLACLISIITSFLLFGLPWFTSCRPCPADATEPCPSIGRSGNYKKFQCPPDHYNDLASLIFNTNDDAIRNLLSKNTNDEFEYSSMLIFFITCFFLSILSYGIVVPAGLFVPIIVTGASYGRFVGMLVGERSNLNHGLYAVLGAASFLGGSMRSTVSLCVIILELTNNLLLLPLIMMVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVVDVVTGPLRIFNGFEKVRNIVFVLKTTGHNGFPVTDEPPVSEAPVLFGIILRDHLLTLLKKKAFQCTPTEISNDALKKFSAEDFAKKGSREGEKIEDIQLTDEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFREVGLRHLLVVPKISGRSPVVGILTRHDFMSEHILGLYPLLVRNKWKRLRFQLPCV* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0257 766 Pfam CBS domain 693 741 IPR000644 -
Lan1g0257 766 PRINTS Chloride channel signature 141 158 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 PRINTS Chloride channel signature 172 191 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 PRINTS Chloride channel signature 236 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 PRINTS Chloride channel signature 461 481 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 PRINTS Chloride channel signature 493 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 PRINTS Chloride channel signature 511 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 PRINTS Chloride channel signature 549 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 CDD CBS_pair_voltage-gated_CLC_euk_bac 565 742 - -
Lan1g0257 766 SMART cbs_1 693 744 IPR000644 -
Lan1g0257 766 SMART cbs_1 582 635 IPR000644 -
Lan1g0257 766 PANTHER CHLORIDE CHANNEL PROTEIN 10 761 - -
Lan1g0257 766 Pfam Voltage gated chloride channel 129 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lan1g0257 766 SUPERFAMILY CBS-domain pair 565 741 IPR046342 -
Lan1g0257 766 CDD ClC_6_like 41 562 - -
Lan1g0257 766 Gene3D - 563 742 IPR046342 -
Lan1g0257 766 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 761 - -
Lan1g0257 766 SUPERFAMILY Clc chloride channel 50 564 IPR014743 -
Lan1g0257 766 Gene3D Clc chloride channel 64 562 - -
Lan1g0257 766 ProSiteProfiles CBS domain profile. 689 750 IPR000644 -
Lan1g0257 766 PRINTS Plant CLC chloride channel signature 46 54 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan1g0257 766 PRINTS Plant CLC chloride channel signature 257 265 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan1g0257 766 PRINTS Plant CLC chloride channel signature 271 281 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan1g0257 766 PRINTS Plant CLC chloride channel signature 289 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lan1g0257 766 PRINTS Plant CLC chloride channel signature 413 429 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0257 Lan-Chr1 1884011 1889938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0257 7 764 Ion Channels AT5G33280 75.462 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0257 K05016 - gmx:100817901 1266.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0257 1 1884011 1889938 Lan1g0257 1 1884011 1889938 ECH