Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0244 ATGGAGCTTCAACTAGGTCTTGCTCTTCCAACCCATTCTTCTGAACCTCTTAACCATAATTCATCACACTCTCACAATAACAAACGTAGTTTCTCTAACCTCTATGACCACAACACCTACAACAATACAGAACATGTTATGCTTCCCACTCTTTCGCTCCTCCCATTAACACCTTCTCACTCAAGCAACCTTTATTATAGCCTAATTAGCACCAAGAACGATGAAAATGATGTAGTGGGTTGGCCACCCGTAAATTCATATAGAAAGAAACTTCGTCACGAAAACTATGGCGATGATGAAGTTGCAAGTAATTATAAAACGGTGTGGATTCATCATCAACCACATAACCATGTTTCAGTTGGTACAAGAGAATGCAATACCCTTTACGTGAAAGTGAAGATGGAGGGTGTTGGAATTGCAAGAAAGATTAATCTCACCAAGCATCATTCTTTTCACACTCTCAAGGAAACCTTGATGAACATGTTTGGAAAATGTCATCAACAACATTCAAAGTTCTATGAATTGGCTTATCAGGACCAAGAAGGTGATTGGCTTCTTGCTGATGATGTGCCATGGAGAAGTTTCATTCAGTGTGCACAACGGCTCAAATTGGTGAAGAACACCAGATAA 630 0.3968 MELQLGLALPTHSSEPLNHNSSHSHNNKRSFSNLYDHNTYNNTEHVMLPTLSLLPLTPSHSSNLYYSLISTKNDENDVVGWPPVNSYRKKLRHENYGDDEVASNYKTVWIHHQPHNHVSVGTRECNTLYVKVKMEGVGIARKINLTKHHSFHTLKETLMNMFGKCHQQHSKFYELAYQDQEGDWLLADDVPWRSFIQCAQRLKLVKNTR* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0244 209 MobiDBLite consensus disorder prediction 1 35 - -
Lan1g0244 209 Pfam AUX/IAA family 171 207 IPR033389 -
Lan1g0244 209 Pfam AUX/IAA family 22 166 IPR033389 -
Lan1g0244 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 207 - -
Lan1g0244 209 MobiDBLite consensus disorder prediction 11 35 - -
Lan1g0244 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 207 IPR003311 GO:0005634|GO:0006355
Lan1g0244 209 Gene3D - 122 209 - -
Lan1g0244 209 ProSiteProfiles PB1 domain profile. 127 209 IPR000270 GO:0005515
Lan1g0244 209 SUPERFAMILY CAD & PB1 domains 122 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0244 Lan-Chr1 1768110 1769221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0244 129 207 B3 DNA Binding Superfamily AT1G19220 32.927 1.31e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan1g0244 AUX_IAA 5.5e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0244 K14484 - gmx:100808466 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0244 1 1768110 1769221 Lan1g0244 1 1768110 1769221 ECH
Lan12g1150 12 17833049 17834297 Lan1g0244 1 1768110 1769221 LSH