Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0226 ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAAATTCGCCACCCTCTTCTGAAAAGAAGGGTTTGGTTAGGCACATTTGAAACAGCAGAAGAAGCTGCACGAGCCTATGATCAAGCTGCGATTTTGATGAGTGGAAGAAATGCCAAAACCAATTTCCCAATAATCCAAACACCAGAAGGTGACCCCAAGATTATGATTAGTAACAATGATAACACCAGCACTTCCTCCATGTCGAAGGATCTAGAAGAGACCCTACATGCTAAGCTTCGAAAATGTGGCAATGTACCTTCACCATCCATGACATGTTTGAGGCTTGACACTGAGAATTCTCATATTGGAGTGTGGCAAAAGCGTGCTGGCCAACGTTCTGATTCAAATTGGGTCATGACTGTTCATCTGGGAAAGAAAAAGAGTGATAAAAGCTATGAGGGTGGTGAAGATTGTAGTAGTAGTTCTCTACCTTCTTCTACTTCTTCAGAAAATAATAATAATAATAATAATGATGGGTCTCTATCAGCAGTAGTGGCAGGGAATGATCAGGAACAAGTGCAAGTGAGGACACAAATGGATGAAGAAGACAGAATTGCCCTTCAAATGATTGAAGAGCTTCTCAATAGGAACTGTCCTAGCCCATCAACCTTTAACAGTGTGGAACAAGGAGTTGATTCCAGCTTTTTTCTTTAA 714 0.4174 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIIQTPEGDPKIMISNNDNTSTSSMSKDLEETLHAKLRKCGNVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVHLGKKKSDKSYEGGEDCSSSSLPSSTSSENNNNNNNDGSLSAVVAGNDQEQVQVRTQMDEEDRIALQMIEELLNRNCPSPSTFNSVEQGVDSSFFL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0226 237 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Lan1g0226 237 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lan1g0226 237 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lan1g0226 237 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lan1g0226 237 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lan1g0226 237 MobiDBLite consensus disorder prediction 146 182 - -
Lan1g0226 237 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lan1g0226 237 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 223 - -
Lan1g0226 237 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lan1g0226 237 MobiDBLite consensus disorder prediction 155 182 - -
Lan1g0226 237 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lan1g0226 237 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0226 Lan-Chr1 1631295 1632226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0226 1 217 AP2-EREBP Transcription Factor Family AT1G15360 54.237 2.76e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g0226 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0226 - - gmx:100814893 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0226 1 1631295 1632226 Lan3g1073 3 23046772 23048310 ECH
Lan1g0226 1 1631295 1632226 Lan1g0226 1 1631295 1632226 ECH
Lan1g1121 1 21261016 21262341 Lan1g0226 1 1631295 1632226 LSH