Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0215 ATGCCTCGTTCGAAGCAAACCTCTCTCAAGCCCCCAATGAAACCACTCGCTAAGAACTATGCAAGGAAACATGTTCCTACAACTTCTGGAGTCAAGAAGCCTTATAGTTATGGCCGTGGAACTATTGTCCTACGTGCTCCACCACAATTCCCAGTGAACAATGAACCATTCATTCAACACTCACCATCTGATGATCATGATCAATCCCCATTGTTCAAGAGAACCAGAACAACTTCCTCTGAGAGTAACAACAACAACCACTCCAATGCACTGCCATATCCTCCTCCAATGATGATGATGCATCCAGCGAAGAACAACAACAACAACCCTATCTCTAATAAACTGGGAACCGGAATGGGCCACATTTTCTACAAGACTCGAATGTGCATCAATTTCAGGCTTGGTTCTTGCACGAATGGTGAGAATTGCAACTTTGCACATGGTGTTGAAGATATGAGGAAGCCACCGCCTAATTGGCAGGAGCTCATTGGCTTGCGCAACAACAACGAAGAACAAAAGCTAGCTGCGTGGAATTGGGATGATGATCAGACAATTATACATAAGATGAAGCTGTGCAAGAAGTACTGTAATGGGGAGGAATGTCCTTATGGTGAAAGGTGTAGTTTTCTTCATGAGGATCCTTCCAAGTTCAGGGATGATTCTGGAAGGATTAGAGAGAGCTCAGCAATCAAAATTGGGACTAATGAATCCCCAAAGTCCTATGGGGATGGCTATGATTATAATAATTCAAAAACTAATAAGGCTGTGGTTATGAATGTGGGTTTAAATGCTGCTAGGGGAAAGATAAGATCTACTTTTTGGAAGACTAAGCTATGCATCAAGTGGGAGACTAGAGGCCAATGCCCTTTTGGAGAAGGTTGTAACTTTGCACATGGCGAATCAGAGTTGCAAGTTCTTGGTGGACGCACCGATACAGAAGCTGCAATTTCTATTCCAATTGCAACCTATGCTCCCACTCCATCATTGCCAAAAGTTGCATCTGCTCCTGTCATTGATGTTGCACCTCCTCTTGTCAACATAGCAAGAGCACCTCTTGCAAATGAAGTTGAGCCAGGGAAGAAGAGTTTATTGAAGTGGAAAGGACCAAAGAAGATCAATCGAATTTATGGTGATTGGCTTGATGATGATTCACTTGAGGAAAACATGCCAAGTGAAATGGATATTTGA 1188 0.4301 MPRSKQTSLKPPMKPLAKNYARKHVPTTSGVKKPYSYGRGTIVLRAPPQFPVNNEPFIQHSPSDDHDQSPLFKRTRTTSSESNNNNHSNALPYPPPMMMMHPAKNNNNNPISNKLGTGMGHIFYKTRMCINFRLGSCTNGENCNFAHGVEDMRKPPPNWQELIGLRNNNEEQKLAAWNWDDDQTIIHKMKLCKKYCNGEECPYGERCSFLHEDPSKFRDDSGRIRESSAIKIGTNESPKSYGDGYDYNNSKTNKAVVMNVGLNAARGKIRSTFWKTKLCIKWETRGQCPFGEGCNFAHGESELQVLGGRTDTEAAISIPIATYAPTPSLPKVASAPVIDVAPPLVNIARAPLANEVEPGKKSLLKWKGPKKINRIYGDWLDDDSLEENMPSEMDI* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0215 395 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 47 384 - -
Lan1g0215 395 MobiDBLite consensus disorder prediction 1 99 - -
Lan1g0215 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 300 IPR000571 GO:0046872
Lan1g0215 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 148 IPR000571 GO:0046872
Lan1g0215 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 211 IPR000571 GO:0046872
Lan1g0215 395 PRINTS Histone H3 signature 12 26 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lan1g0215 395 PRINTS Histone H3 signature 29 50 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lan1g0215 395 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Lan1g0215 395 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Lan1g0215 395 MobiDBLite consensus disorder prediction 73 91 - -
Lan1g0215 395 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Lan1g0215 395 SMART c3hfinal6 186 213 IPR000571 GO:0046872
Lan1g0215 395 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Lan1g0215 395 Gene3D - 267 305 - -
Lan1g0215 395 Gene3D - 120 154 - -
Lan1g0215 395 Gene3D - 184 215 - -
Lan1g0215 395 PANTHER CCCH ZINC FINGER/TIS11-RELATED 47 384 IPR045877 GO:0003729
Lan1g0215 395 SUPERFAMILY CCCH zinc finger 272 304 IPR036855 GO:0046872
Lan1g0215 395 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872
Lan1g0215 395 SUPERFAMILY CCCH zinc finger 185 213 IPR036855 GO:0046872
Lan1g0215 395 SUPERFAMILY CCCH zinc finger 121 154 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0215 Lan-Chr1 1558910 1564084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0215 275 304 C3H Transcription Factor Family AT1G68200 56.667 7.45e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g0215 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0215 - - lang:109345375 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0215 1 1558910 1564084 Lan1g0215 1 1558910 1564084 ECH
Lan12g1181 12 18002691 18005005 Lan1g0215 1 1558910 1564084 LSH
Lan1g1111 1 21197313 21200132 Lan1g0215 1 1558910 1564084 LSH