Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0201 ATGAAAGGGGAAGTGCAGCTTCAGCCACCACAAATTGTGCAAAACCCTAGTAGAGATTCCGATCCTTTACTCGAAAATCAAGAGGAGGAGGAAGAGGAGCGTGAATCCCCTGCAGCAACCTCCACTGAGATTAAGGATGAGGATGAGGATGTTGAGGCTGGTTTACTCCCTTCTTGTCGAATTTGTCTCGAAAGCGATTCTGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGTACTCAGCAATTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTGAAAGAAGGATTTGCCTTCTCACACTGCACCACTTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGATAACTCATGGCGTAAAGTAAAGTTCAGACTTTTTGTTGCAAGGGATGTTTTCCTTGTTTTTGTGGCTGTACAAACTGTGATTGCTGCTATCGGTGGCTTTGCTTACATCATGGACAAAGATGGGAACTTCAGGAACTCTTTTGACGATGGTTGGGATAGGATACTGTCAAGACACCCGATTCCATTTTATTACTGTATTGGAGTGCTGTCGTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCATTGTTCCTCCCTCAATAACAATGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCTTGGACTGTTTTCCGGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTCGGTATAGCATATGGTTTCCTTGCTACCACCATGGCCATTCAAAGAATCTGGCAGAGGCATTACCATATCCTCACCAAGCGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTGGTGGCAGTTATTCCCCACCAAAGTTGGACCCAGAACATGAAGCTCGCTTGAAAATGCTTAACCTTTTGTGA 945 0.4444 MKGEVQLQPPQIVQNPSRDSDPLLENQEEEEEERESPAATSTEIKDEDEDVEAGLLPSCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKVKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSRHPIPFYYCIGVLSFFVLIGFFGLILHCSSLNNNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGSYSPPKLDPEHEARLKMLNLL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0201 314 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 313 - -
Lan1g0201 314 SMART ringv_2 58 110 IPR011016 GO:0008270
Lan1g0201 314 CDD RING_CH-C4HC3_MARCH 59 110 - -
Lan1g0201 314 SUPERFAMILY RING/U-box 57 114 - -
Lan1g0201 314 ProSiteProfiles Zinc finger RING-CH-type profile. 51 116 IPR011016 GO:0008270
Lan1g0201 314 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 313 - -
Lan1g0201 314 MobiDBLite consensus disorder prediction 1 49 - -
Lan1g0201 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 122 IPR013083 -
Lan1g0201 314 Pfam RING-variant domain 59 109 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0201 Lan-Chr1 1463056 1466362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0201 1 314 C3H Transcription Factor Family AT1G11020 77.640 3.46e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0201 - - lang:109345289 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0201 1 1463056 1466362 Lan1g0201 1 1463056 1466362 ECH