Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0194 ATGGCATCATCACCATCCAAACTAAGCCTTGATTGCAAAACCCATATGGCACTGAAATCATTTGGGGGTCAGAATAGTGATCAGAACTACAAGGTTGAAGAGATCATTTCTCAACTTGAGGAAGAACGTCTCAAGATTGATGCCTTCAAACGCGAGCTTCCTCTCTGCATGCAACTTCTCACTAACGCTATGGAGGCTTCAAGGCAGCAACTTGAGGTGTTAAAAGTGAATCAAGGGACAAGGCCAGTTTTGGAAGAGTTTATACCAATAAAGCACTCAACCTATGAAAGCTTTTCTGCTGAAAAGGAAACAAAAATAACTGATAACAAGGCAGATTGGATGACTTCTGCTCAATTATGGAGCCAAGCAAGCGAAGGAACCAAACAACAAGCCACTACAATTATCACATCACTCCCTACAGAAGCAGTTGATAATATTGGTTTCAGCATGAACCCTAGTCTAGTTCTAAACCACAATAACAAACAAGGGAATCATAATGGAGGAGGAGGAGGAGGAGCTTTCCTTCCATTTTTAAAAGAAAGAAATTCTTCCCAAATTTCTGCATTGAGGGCTCTCCCTGAATTGGCTCTGGCCTCTGCCGAGAAAGAAATTGAGGATAAGAAATGTGAAGATCCATGTCTGAAGATGGAGAATTCAAGCAAAGGTGGCACTGATGGAATGGTAGTTGATCAAGGAAAAGGGCCATCTCATGCACAAAACACAACAACGGCTGCTGCTGCTACTACTCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCAGAATTGCACCGTCGATTTGTTAACGCTCTTCAAATGCTTGGTGGTTCTCAAGTGGCCACTCCAAAACAGATTAGGGAGTTGATGAAAGTTGATGGTTTGACTAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACCAGAAGACCCAGTCCAAGTCCACAATCAGGTGCACCACCACCACAGCTTGTAGTCCTAGGAGGAATTTGGGTCCCACCAGAATACGCCACTGCCGGGGCTCCTACCCTCTATAGCGCGCACCCTAACTCACTACCTCAGGAGTTCTACACCGCCGCGCCACCACAGCAGCTGCTTCCACCGCCTCATCCTCCGCACCAGAATGCCCTCCATCACCACCACCAACTCATGCACGTGTACAAGACGGCCCCGCAGAGGCAAAGCTCGCCGGAGTACGATGTTCAAGGAGGATCAGAGAGTATAGAAGATGGAAAATCTGAGAGTAGCAGCTGGAAAGGGGAGAGTGGTGAGAATGAAGGAGAGAGAAAAGGGTTGCAGTATGAAGAGAGTAATGGGAGTGAAATCACTCTCAAATTCTAG 1347 0.4588 MASSPSKLSLDCKTHMALKSFGGQNSDQNYKVEEIISQLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLEVLKVNQGTRPVLEEFIPIKHSTYESFSAEKETKITDNKADWMTSAQLWSQASEGTKQQATTIITSLPTEAVDNIGFSMNPSLVLNHNNKQGNHNGGGGGGAFLPFLKERNSSQISALRALPELALASAEKEIEDKKCEDPCLKMENSSKGGTDGMVVDQGKGPSHAQNTTTAAAATTQTHRKARRCWSPELHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQSGAPPPQLVVLGGIWVPPEYATAGAPTLYSAHPNSLPQEFYTAAPPQQLLPPPHPPHQNALHHHHQLMHVYKTAPQRQSSPEYDVQGGSESIEDGKSESSSWKGESGENEGERKGLQYEESNGSEITLKF* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0194 448 Coils Coil 57 77 - -
Lan1g0194 448 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 448 - -
Lan1g0194 448 Pfam Myb-like DNA-binding domain 256 307 IPR001005 -
Lan1g0194 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 311 IPR017930 -
Lan1g0194 448 Coils Coil 32 52 - -
Lan1g0194 448 MobiDBLite consensus disorder prediction 390 404 - -
Lan1g0194 448 SUPERFAMILY Homeodomain-like 251 312 IPR009057 -
Lan1g0194 448 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 448 IPR044787 GO:0003700|GO:0006355
Lan1g0194 448 MobiDBLite consensus disorder prediction 234 254 - -
Lan1g0194 448 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 254 309 IPR006447 GO:0003677
Lan1g0194 448 MobiDBLite consensus disorder prediction 217 256 - -
Lan1g0194 448 Gene3D - 253 311 - -
Lan1g0194 448 MobiDBLite consensus disorder prediction 414 437 - -
Lan1g0194 448 MobiDBLite consensus disorder prediction 362 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0194 Lan-Chr1 1414050 1416944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0194 1 448 G2-like Transcription Factor Family AT2G03500 46.667 1.01e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan1g0194 Myb_DNA-binding 2.6e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0194 1 1414050 1416944 Lan1g0194 1 1414050 1416944 ECH
Lan1g1102 1 21131759 21134437 Lan1g0194 1 1414050 1416944 LSH