Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0192 ATGTCTATCACTAACTGGGAAGCCGATAAAATGTTAGATGTGTATATCTACAATTATCTTGTGAAGAGACAACTTCATACATCTGCAAGTGTATTTCAGGCCGAAGCAAATGTTCCAACTGAATTTGTTGCTATAGACGCACCGAATAGTTTTCTCTTTGAGTGGTGGTCTGTCTTTTGGGACATATTCATTGGTAGGACCGATCAGAAGCACTCGGAAGCAGCAGCATTTTACATCAAGAAGCGACAAGAGCATCAGAGTCCAATTCCAAACCAGAACCAACAAATGCAAATGCAGCTCTTATTGCAGAGGCATGCTCAGCAGCATCAGCAACGCAGTATTAGCAATGATCCTTTGATGAGGCCGAACCTTGCTGCTTCTAATGCTATGGCAACAAAAATGTATGAGGACAGATTGAAACCTCCATTGCAGAGAGATGTTTTAAGTGATTCAACCATCAAGCATGGGGTAGGCCGTAATGTCGGTCAACTTCTGGAACCAAATCATGCCTCATTGCTGAAAGCAGTAGAAGCAACAACTAGCGGACAGGCCACAAGGCAAACACTGCTTGCTGCACTTAGCATTTTACAGGGGAATGTCCAAGTTCAGAACCAGAATCCGTTATTTCCAGGGTATACACAGTCTTGTGTCCTGAAACAGGGCATAACGAGTGATACTAGTGCAATGATGAGGTCTCAAGCTGTTGATTCAGAAGGGTCATATATTGCTGGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTTTGGCGGGATTGGATCAGCTTCGCTCTGGACTTTTCCACCAGAATAATTTGATGCAGTCTTCACAAGCTTTCAATCAACTTTCACCACAGCAGCAACTTATGCTTCAGGCACAGCAGAATTCGTTTCCCCCATCCGTCAGTGATTTTGAGAGCAGGAGGCTCAGAGCTCTTCTAAATAAAAATATTGGTCTTGGGAAAGATGGCCGATCAAATTTTCTAGGTGATTTAATTTCTAATGTTGGAACACCTTCACAAGCTGGTTCTCCTATGTTGCCTCATCTAGACTCAGATATGTTCCTTAAGCAACAAGATCAAAAGAGTAATCAGCAGCTTCAACATTTTTCGCAAAATACTCTTTCGAGGCAACAGTTTCAGAGGCTCCAGCGCCACGAAAAAGTTGGTTCTGGCAACATAATAGATGGCTGCATGTCCAGCACCTTCCAAGGAAATGACCAGGCTTCGAAAAGTCAAGTTGGCTGGAAGCGAAAGCAAGCAACATCTTCAGGTCCTGCCAATAGCTCTGGAATTGCAAACACCACAGGACCTTCTGCCAGCTCACCTTCAACTCCATCTACTCAAACACCAGGAGATGTGATGTCCGTGCCAACTCTGCAACAGAATGTTCCTTCTTCTAAGTCATCACTTATGTCTGCTACTGATGGTTTGGGCTCACATGCGTCAGCACAAAATCAATTGGATGATATGGACCATCTCGCGGGTGAGGGATCTTTGAGTGACAATGTTGAGTCTTTCTTATCTCCGGATGATGCAGAACCTAGAGATAGAGTTGGCGAAGGATTCTCATTCAAGGAGATCAAGCATATAATGGCAAGTACACATAAAGTCGAGTGTTGTCATTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCAAGATAAAAAGGCTAATTTGTGGTGCACAGAATCATTTAACATGAAATCTACACTTGAAGAACACAATCAATCGATAACTGATGTCCGGTTTAGTCCAAGCATGTTGCATGTTGGCACATCCTCTGCTGATAAAACTGTTAGGGTTTGGGATGTTGATAACCCTGGTTATTCTCTTAGAACATTCACAGGGCATGCAACAACTGTAATGTCACTAGACTTTCACCCAAGTAAAGAAGACCTTATTTGCTCATGTGATAATAGCGAGATAAGATACTGGAGTATAAAAAATGGTAGTACTGCTGGGGTTTTCAAGGGTGGTGTAACTCAGATGAGATTTCAACCTGGTTTGGGAAGACTTCTAGCTGCAGCAGTAGATAACCTGATATCCATTCTAGATGTGGAAACCCTGGGTTGCATACTTAAATTACAGGGACATAATAACAATGTCAGAAGTGTGTGCTGGGACTCTTCTGGAAAACATCTAGCATCACTTAGTGATGATCTAGTTAGAGTGTGGACAGTTGGATCTGGTAGCAAAGGAGAATGCATTCATGAACTGAATGCTACTTCTGCCAACAAATTCATTACATGTGTTTTCCATCCCTTCTATCCTTTGTTGGTCATTGGTTGCCATGAGACACTTGTGCTGTGGAACTTTGGTGAGAACAAGACAATGTCTCTACATGCACATGACAAGGTTGTGTCTGCTTTAGCAGTATCAAATGTTAATGGGTTGGTGGCTTCAGCTAGCCATGACAAACATTTCAAGATCTGGAAGTGA 2457 0.4278 MSITNWEADKMLDVYIYNYLVKRQLHTSASVFQAEANVPTEFVAIDAPNSFLFEWWSVFWDIFIGRTDQKHSEAAAFYIKKRQEHQSPIPNQNQQMQMQLLLQRHAQQHQQRSISNDPLMRPNLAASNAMATKMYEDRLKPPLQRDVLSDSTIKHGVGRNVGQLLEPNHASLLKAVEATTSGQATRQTLLAALSILQGNVQVQNQNPLFPGYTQSCVLKQGITSDTSAMMRSQAVDSEGSYIAGHGSNQGGSNLTLKGWPLAGLDQLRSGLFHQNNLMQSSQAFNQLSPQQQLMLQAQQNSFPPSVSDFESRRLRALLNKNIGLGKDGRSNFLGDLISNVGTPSQAGSPMLPHLDSDMFLKQQDQKSNQQLQHFSQNTLSRQQFQRLQRHEKVGSGNIIDGCMSSTFQGNDQASKSQVGWKRKQATSSGPANSSGIANTTGPSASSPSTPSTQTPGDVMSVPTLQQNVPSSKSSLMSATDGLGSHASAQNQLDDMDHLAGEGSLSDNVESFLSPDDAEPRDRVGEGFSFKEIKHIMASTHKVECCHFSSDGKLFATGGQDKKANLWCTESFNMKSTLEEHNQSITDVRFSPSMLHVGTSSADKTVRVWDVDNPGYSLRTFTGHATTVMSLDFHPSKEDLICSCDNSEIRYWSIKNGSTAGVFKGGVTQMRFQPGLGRLLAAAVDNLISILDVETLGCILKLQGHNNNVRSVCWDSSGKHLASLSDDLVRVWTVGSGSKGECIHELNATSANKFITCVFHPFYPLLVIGCHETLVLWNFGENKTMSLHAHDKVVSALAVSNVNGLVASASHDKHFKIWK* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0192 818 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 612 - -
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 620 657 - -
Lan1g0192 818 Pfam LisH 10 36 IPR006594 GO:0005515
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 566 IPR001680 GO:0005515
Lan1g0192 818 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lan1g0192 818 Gene3D - 660 818 IPR015943 GO:0005515
Lan1g0192 818 Gene3D - 517 659 IPR015943 GO:0005515
Lan1g0192 818 SMART WD40_4 528 567 IPR001680 GO:0005515
Lan1g0192 818 SMART WD40_4 655 691 IPR001680 GO:0005515
Lan1g0192 818 SMART WD40_4 613 652 IPR001680 GO:0005515
Lan1g0192 818 SMART WD40_4 694 732 IPR001680 GO:0005515
Lan1g0192 818 SMART WD40_4 738 777 IPR001680 GO:0005515
Lan1g0192 818 SMART WD40_4 570 609 IPR001680 GO:0005515
Lan1g0192 818 SMART WD40_4 779 818 IPR001680 GO:0005515
Lan1g0192 818 SMART Lish 8 40 IPR006594 GO:0005515
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 818 IPR001680 GO:0005515
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 786 818 - -
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 661 IPR001680 GO:0005515
Lan1g0192 818 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 4 818 IPR044716 GO:0003714
Lan1g0192 818 PANTHER LISH-SSDP-WD40 4 818 - -
Lan1g0192 818 Pfam WD domain, G-beta repeat 782 818 IPR001680 GO:0005515
Lan1g0192 818 Pfam WD domain, G-beta repeat 538 566 IPR001680 GO:0005515
Lan1g0192 818 Pfam WD domain, G-beta repeat 575 609 IPR001680 GO:0005515
Lan1g0192 818 Pfam WD domain, G-beta repeat 616 652 IPR001680 GO:0005515
Lan1g0192 818 Pfam WD domain, G-beta repeat 697 731 IPR001680 GO:0005515
Lan1g0192 818 SUPERFAMILY WD40 repeat-like 528 818 IPR036322 GO:0005515
Lan1g0192 818 CDD WD40 531 818 - -
Lan1g0192 818 MobiDBLite consensus disorder prediction 404 487 - -
Lan1g0192 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 612 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0192 Lan-Chr1 1380528 1387012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0192 531 792 Miscellaneous Gene Families AT5G08390 23.810 6.31e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan1g0192 WD40 0.0095 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0192 - - gmx:100801265 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0192 1 1380528 1387012 Lan1g0192 1 1380528 1387012 ECH