Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0171 ATGGCAGAAGAACCAGAAAACAACCTTCAACTTTCTCCAATGGATGAAACTAACAAGAAGAATAAGAAGAAGAATAAGAATAAGAAAAACAACAAGAAAAGACCTCGTGATACTGAAACCGACGAGGAATCACCACAAGTAGAGGAAAATGTAGAATCAACGGAGAATGAGAAGGTCGAAGAAGGTGAAGTGAAAATTGAGAAGAAAAAGAAGAAAGGTGGTTCTGGAATCATGAGTACAGAAGCATTTGCATCACTGGGATTATCTGAAGCAACATATAAAGCAATCAATGATATGGGTTTCGAGAATATGACTCAGATTCAAGCAAGAGCAATTCCACCACTTTTGATTGGTAAAGATGTTCTTGGTGCTGCTAGGACTGGTTCTGGTAAAACCCTAGCTTTTCTTATTCCTGCTGTTGAACTCTTGTACAATGTCCAATTTACCCCTCGTAATGGTGCTGGTGTTATTGTCATTTGTCCCACTAGAGAGCTTGCGATTCAGACGCATGCTGTGGCGAAGGAGCTTCTGAAGTATCATTCACAAACTCTTGCATTGGTGATTGGAGGGGCAACTAGAAAAATTGAAGCGGAACGCCTCGCTAAAGGTGTCAATCTATTGGTAGGAACTCCTGGCCGTCTTCTCGATCATCTTCAAAATACGAAGGGGTTCATGTATAAAAACTTGAAGTGCCTTATGATTGATGAAGCTGATAGGATACTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACAGCTTTATTTTCAGCTACACAAACGAAGAAGGTTGAGGATCTTGCGCGGTTGTCATTTCAGACTACTCCTGTCTATATTGATGTGGACGATGGGAGAAGCAAGGTCACAAATGAAGGATTGCTGCAGGGATATGTTGTTGTTCCATGTGCCAAGCGATTTATTGTTCTCTATTCTTTCTTGAAGAGACACAAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTCCATGCAGACCTTCTTAATCTCATCCAGTTGAATTGCTTAAGTATTCATGGAAAACAAAAGCAGCAGAGCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAATGGGATCTTGCTCTGTACCGATGTTGCTGCTCGTGGGCTTGATATACCAGCTGTGGACTGGATTGTACAGTATGATCCGCCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGAGAAGGGGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCCGAAGAACTGCAATTTCTTCGCTATCTGAAGGCTGCTAAGGTCCCTGTGAAAGAGTACGCATATGATGAATCAAAGGTGGCCAATGTACAGTCTCACCTGGAGAATTTGGTAGCTAACAATTTTTACTTGAACAAGATGGCTAAAGAAGCTTATAGATCATATATATTAGCTTACAATTCACATTCGATGAAGGACATATTCAATGTTCACCGCCTTGATATGCCGGCCATTGCTGCTTCATTCTGTTTTTCGAACCCGCCAAATGTGAGTGTGAACATAAACAGCAGTAAGCAAAGGAACAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGTGACAACAATCCTTATGGAAAGAGAAATGCTGATGATACCCGCCAGTTTGTGAGGCATTAG 1701 0.4103 MAEEPENNLQLSPMDETNKKNKKKNKNKKNNKKRPRDTETDEESPQVEENVESTENEKVEEGEVKIEKKKKKGGSGIMSTEAFASLGLSEATYKAINDMGFENMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLALVIGGATRKIEAERLAKGVNLLVGTPGRLLDHLQNTKGFMYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRSKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHKSKKVMVFFSSCNSVKFHADLLNLIQLNCLSIHGKQKQQSRTTTFFDFCKAENGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDESKVANVQSHLENLVANNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDMPAIAASFCFSNPPNVSVNINSSKQRNKMRKVDGSRHGFSDNNPYGKRNADDTRQFVRH* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0171 566 MobiDBLite consensus disorder prediction 1 72 - -
Lan1g0171 566 CDD DEADc_DDX18 92 289 IPR044773 GO:0003724|GO:0005524
Lan1g0171 566 SMART DUF4217_3 462 525 IPR025313 -
Lan1g0171 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Lan1g0171 566 Gene3D - 10 291 IPR027417 -
Lan1g0171 566 Gene3D - 302 542 IPR027417 -
Lan1g0171 566 MobiDBLite consensus disorder prediction 51 72 - -
Lan1g0171 566 Pfam DEAD/DEAH box helicase 105 276 IPR011545 GO:0003676|GO:0005524
Lan1g0171 566 CDD SF2_C_DEAD 302 432 - -
Lan1g0171 566 PANTHER RNA HELICASE 39 557 - -
Lan1g0171 566 Pfam Helicase conserved C-terminal domain 317 421 IPR001650 -
Lan1g0171 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 287 IPR014001 -
Lan1g0171 566 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 39 557 - -
Lan1g0171 566 SMART helicmild6 341 422 IPR001650 -
Lan1g0171 566 SMART ultradead3 100 305 IPR014001 -
Lan1g0171 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 471 IPR001650 -
Lan1g0171 566 Coils Coil 14 34 - -
Lan1g0171 566 Pfam Domain of unknown function (DUF4217) 463 523 IPR025313 -
Lan1g0171 566 MobiDBLite consensus disorder prediction 526 566 - -
Lan1g0171 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 443 IPR027417 -
Lan1g0171 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0171 Lan-Chr1 1222468 1227000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0171 76 441 Eukaryotic Initiation Factors Gene Family AT3G19760 28.883 2.81e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0171 K13179 - gmx:100797375 939.102