Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0154 ATGGCACAAGATACTGTTTCTGGTGCTGACTCACCTCGGCGACGTTATGGCCTATTACGAGATCAGGTTCAACTAGTTAAAAGAAAGGACTCTGATCGCTATGAAATCATTCCAATCCAAGATACTTTGTCATTTGAGAAAGGGTTCTTCATAGTCATTCGTGCATGTCAGTTGTTAGCTCAAAAGAATGATGGTATCATATTAGTAGGAATTGCAGGTCCTTCTGGAGCCGGGAAAACTGTTTTCACTGAGAAGGTCCTCAATTTTATGCCAAGCTTAGCTGTCTTATCAATGGACAATTATAATGATTCTAGTCGAATCATAGATGGCAACTTTGATGATCCTCGGTTGACGGATTATGATACCTTGCTAAAAAATATACAGGGTCTTAAAGCAGGGAAGCCAGTCCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGTCTGTCGAAGTCCCCAGCTCCCGTATCGTAATCATAGAAGGAATCTATGCCTTAAGTGAAAAGCTAAGACCCTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTTTACGAGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCGGATCTCCAAACAGCACATATAAAAATTACCAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCGACCTACATATTGAAGTCAGCAAGAGCTGTGACAGTAGACCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAAAACCAAGAAGAAACATACGACATATATCTTCTACCCCCTGGGGAAGATCCTGAAGCTTGTCAATCGTATTTAAGGATGAGAAACCGAGATGGAAAGTACAATCTTATGTTTGAGGAATGGGTTACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCTGCTATTCTGAAAAGAATCAGTCATGTCTTTCATGATGATAAAGTATCCGTAAAAACTGATTGGCTAGAACAACTTAATCGGCTATATGTTCAGGTGCAAGGGAGAGATAGGAACTATGTTAAACTTGTAGCAGAGAAACTGGGGTTGGATGGTTCATATGTTTCTCGTACCTACATTGAACAAATACAGCTAGAAAAGCTCGTAAATGATGTGATGGCATTGCCAGATGATCTGAAAACAAAACTCAGCATAGATGATGATATGGTTTTAAGTCCCAAAGAAGCCATTTCCCGAGCTTCTACAGATAGAAGAATGAAGTATCTTAATAGCAGTAGCATTTCACACTCATATTCAAATCAAAGGGAGAAGAGTCTATCCAAGCTCACTAGACTAGCTATAAATAACAGATTTGATGCGAGAGTTCTAGAATCGCCACCTGCACCGATTGCTAACCAAGGAGTTGTCACTCATCTTTCTGAACAAATTTCCACATTAAATGAAAGAATGGATGAGTTCACCTCTCGTATTGAAGAGCTGAATTTGAAGATTGCAATGAGAGGAGTTTCAGCCAGTCAACCAAACTTGGCTCTACAGGCTGATGCCGGCAATGCCTCAGGCCCTACTCTCTTTGTAAATGGAATGGGCAATGGTTCATTGACTGGATCTTTGCTGCCTACTTCATTATCCTCTTCTCAATTGGCTAGGGATTCTCCCCTCATGGAAGAGGTTTTACTTGTTGCACGAGGGCAACGTCAAATCATGCATCAGCTAAACACTCTGAGCAATCTTTTGCATGAATACTATGATAGGTCAAAGCAGAGAAGAACAGACCAAACAACCAGAACGCGTGATGTTGAATCAGTTGCCATCCCTCTGGTTCTGACATTGGCCATAGGTTCTATTGCTGTATACTTTTTCAAGACATCCCAAAAATAA 1977 0.4072 MAQDTVSGADSPRRRYGLLRDQVQLVKRKDSDRYEIIPIQDTLSFEKGFFIVIRACQLLAQKNDGIILVGIAGPSGAGKTVFTEKVLNFMPSLAVLSMDNYNDSSRIIDGNFDDPRLTDYDTLLKNIQGLKAGKPVQVPIYDFKSSSRIGYRSVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKITNKFNPFSGFQNPTYILKSARAVTVDQIKAVIAAEHTENQEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRISHVFHDDKVSVKTDWLEQLNRLYVQVQGRDRNYVKLVAEKLGLDGSYVSRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDMVLSPKEAISRASTDRRMKYLNSSSISHSYSNQREKSLSKLTRLAINNRFDARVLESPPAPIANQGVVTHLSEQISTLNERMDEFTSRIEELNLKIAMRGVSASQPNLALQADAGNASGPTLFVNGMGNGSLTGSLLPTSLSSSQLARDSPLMEEVLLVARGQRQIMHQLNTLSNLLHEYYDRSKQRRTDQTTRTRDVESVAIPLVLTLAIGSIAVYFFKTSQK* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0154 658 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Lan1g0154 658 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Lan1g0154 658 PRINTS Uridine kinase signature 66 83 - -
Lan1g0154 658 PRINTS Uridine kinase signature 133 148 - -
Lan1g0154 658 PRINTS Uridine kinase signature 189 199 - -
Lan1g0154 658 PRINTS Uridine kinase signature 225 238 - -
Lan1g0154 658 PANTHER URIDINE KINASE 6 648 - -
Lan1g0154 658 Pfam CYTH domain 273 405 IPR023577 -
Lan1g0154 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 239 IPR027417 -
Lan1g0154 658 Coils Coil 502 529 - -
Lan1g0154 658 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
Lan1g0154 658 CDD UMPK_like 68 240 - -
Lan1g0154 658 Gene3D - 67 248 IPR027417 -
Lan1g0154 658 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 648 - -
Lan1g0154 658 Gene3D - 255 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0154 Lan-Chr1 1146565 1154817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0154 67 237 PRT Gene Family AT5G40870 26.667 2.85e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0154 K00876 - gmx:100803122 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0453 18 8691565 8708863 Lan1g0154 1 1146565 1154817 PCT