Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0152 ATGGGGTGCTCATTTTCTGGTTTAAATGCTTTATACGACACCGTTCACGGCGGCGGTGATGACGTTTGGATCAACGATAACCGTTTCCGCGTCGTTAAGCAACTCGGTGAAGGTGCCTTCGCTTATGTCTTCCTCGTCAAGGAGATTCTCTCCGATTCACCTTCCTCTGGCCTCGCTTCAAAGCTTAAACACTCTTCTCATATCTCAGATGACGGAACTTATGCTATGAAAAAGGTCCTCATTCAGAACAGTGAACAGCTGGAGTTGGTAAGGGAGGAGATCCGTGTTTCGTCTTTGTTCAATCACCCGAATCTGCTCCCTCTTCTTGACCATGCAATTATCTCTGTTAAGCCTACCCAAGAAAAATCTTGGACCAACGAGGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGACAGCTAAGAAGGAATTCTATTCTACCTCAGATGTTCTTCAAATTTTTCGCCAGCTTTGTGCTGGACTCAAGCATATGCACACTTTAGATCTTCCATATGCTCATAATGATGTCAAACCTGGCAACGTTCTCATAACACATAGAAAAGGACAACCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCAAGTTAGATCCAGACAGGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGATGAGAGGACAGACGTTTGGTCGCTAGGATGCACATTATATGCAATAATGTATGGGGTATCACCATTTGAATATGCACTTGGAGAATCTGGTGGAAGCCTGCAATTGGCTATCATTAATGCTCAGATCAAATGGCCAACTGGACCTAAGCCCTCATATCCAGATGCTCTTCGTCAATTTGTGTCATGGATGCTCCAACCACAGGCTGCTGTGCGGCCCCATATTGACGATATCGTTATCCATGTTGATAAGTTGATTGCAAAGTTCTCTCAATGA 1032 0.4525 MGCSFSGLNALYDTVHGGGDDVWINDNRFRVVKQLGEGAFAYVFLVKEILSDSPSSGLASKLKHSSHISDDGTYAMKKVLIQNSEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQEKSWTNEAYLLFPVHLDGTLLDNAKTMTAKKEFYSTSDVLQIFRQLCAGLKHMHTLDLPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQVRSRQEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIINAQIKWPTGPKPSYPDALRQFVSWMLQPQAAVRPHIDDIVIHVDKLIAKFSQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0152 343 SUPERFAMILY Protein kinase-like (PK-like) 21 333 IPR011009 -
Lan1g0152 343 CDD STKc_16 28 339 - -
Lan1g0152 343 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 342 - -
Lan1g0152 343 ProSiteProfiles Protein kinase domain profile. 29 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g0152 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lan1g0152 343 Pfam Protein kinase domain 59 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g0152 343 SMART serkin_6 29 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g0152 343 Gene3D Phosphorylase Kinase; domain 1 13 133 - -
Lan1g0152 343 PANTHER - 1 342 - -
Lan1g0152 343 Gene3D Transferase(Phosphotransferase) domain 1 136 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0152 Lan-Chr1 1126868 1131013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0152 34 333 EF-hand Containing Proteins AT4G04710 24.510 4.26e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lan1g0152 Pkinase 1.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0152 K08856 - gmx:100803659 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1216 12 18200791 18204898 Lan1g0152 1 1126868 1131013 LSH
Lan1g1082 1 20952671 20956396 Lan1g0152 1 1126868 1131013 LSH