Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0150 ATGGCAGATGTTACCACCTATCTCCGCCACCATAAACCCGACGAAGATTTTGATTCGATTACCTTACCCTACTTTTCTCAATCTTCCCCTGATTTCAATTTCGACTTTTATTCTTCTGAACCCGAATTCCCACCCACCCCCGAACCCGATTCACTTTCCCTCTTCGACCGCCATAACCAGATCAATTTCGCCATTGATATCTTTCAACAATGTGTCGATCAATCTCAGGTATCTGGCCATGGATATTTCGTCACCGAACCCCGAAACGACGACGATTTTGGCGTTATCGATGTGTACTCTGCTCTGGACATGGATGATAATTTGGGACTCGATTTAGGGTTTGGCGTCGAAAGGGATGGGGTTTCTATTTCTGAATCGAATGAGGCGCCTTTTCACAACTGCGTTTGCGTTATGGGGTTGGGATCGGATTCTGATGAGGAAGAAGAAGAAAATGAGGTTTTAGAGAATTGCGTGAATTGTGATGAAGAGTATAACGATGTAAACGATGACGTTTTGATCATTCCTTTGTGTTGGGATTCGCTTCAGTTGGATGAGGATAACAAGGAGAGAATTGAGGATTTCGAGTGGGAGGAAGTGAATGTGGATGGTAGAGTTGATGAGAGAGAAGTTTTGAGCATGCTCACTATTGATGACGATAGATCGGTTTCGGTTTCGGGGATTCCGGTGATTGAAGAAGAGGAAGAAGATGTGAGTGTTGTGAGAATGGGTGGGATGGAGAATTTGGAGTGGGAAGTGTTATTGAATGCTAATAATTTGAATACAATCACAAGCCCTGATTTGGATAATGATGATGATTTAGAAGAGCCTTATTTTAGTGATCATGATGAATACATATATGCTACTGATTATGAAATGATGTTTGGTCAATTTGTTGAGAATGAATACACTTTAAGGCCTCCGGCTTCTGTGTCCGTTGTTCGGAATCTGCCATCAGTGGTTGTGACTAAGGAAGATGTGGACAACAACAATGCACTCTGTGCTGTTTGCAAAGATGACTTTGCTGTGGCAGAACAAGCTAAGCAGTTGCCGTGTTCACATCGATACCATGGTGATTGCATTGTACCTTGGTTGGCCATTCGGAACACTTGCCCTGTTTGCCGCTATGAGTTTCCGACCGATGATGCTGATTATGAGCGTATGAGGACCAATAGATCTGCTCTGCGGGCATGA 1191 0.4358 MADVTTYLRHHKPDEDFDSITLPYFSQSSPDFNFDFYSSEPEFPPTPEPDSLSLFDRHNQINFAIDIFQQCVDQSQVSGHGYFVTEPRNDDDFGVIDVYSALDMDDNLGLDLGFGVERDGVSISESNEAPFHNCVCVMGLGSDSDEEEEENEVLENCVNCDEEYNDVNDDVLIIPLCWDSLQLDEDNKERIEDFEWEEVNVDGRVDEREVLSMLTIDDDRSVSVSGIPVIEEEEEDVSVVRMGGMENLEWEVLLNANNLNTITSPDLDNDDDLEEPYFSDHDEYIYATDYEMMFGQFVENEYTLRPPASVSVVRNLPSVVVTKEDVDNNNALCAVCKDDFAVAEQAKQLPCSHRYHGDCIVPWLAIRNTCPVCRYEFPTDDADYERMRTNRSALRA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0150 396 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Lan1g0150 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 380 IPR013083 -
Lan1g0150 396 SMART ring_2 333 373 IPR001841 -
Lan1g0150 396 SUPERFAMILY RING/U-box 313 380 - -
Lan1g0150 396 CDD RING-H2_RNF126_like 333 374 - -
Lan1g0150 396 PANTHER - 55 392 - -
Lan1g0150 396 Pfam Ring finger domain 333 374 IPR001841 -
Lan1g0150 396 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0150 Lan-Chr1 1120898 1122395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0150 172 380 C3H Transcription Factor Family AT5G60820 45.455 2.18e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0150 - - adu:107469048 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1217 12 18207742 18209223 Lan1g0150 1 1120898 1122395 LSH