Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0149 ATGAAGTTTCTGAAGACCCATAATTTCTTGCAGCCACTAGAACGTGCAGAAGCGAAAGCCAGAGATGAAATATCATTATTATCGGTATCTACTAAGCCAAATTCACCTTCTGTTGAGCACCTTTTACCTGGAGGAATTGGAACATACAGTATTAGCCATGTTTCTTATTTTGATAATAATAATGAAAGGGTTCCAAAGCCAGAAGCATCACTTTTTACTGTAAATCAAGGAATTAGTACGGATAGGAATGATGAAAATTCAAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGATTCTGCGGTTAAGAAGGGAAAGACAGGGAAGGAGAATAATGTGTCCGACAAAACCATTCTAGGAGGGACATGGACGTTGAGTGATCGAACATCACAGTCATTTTCTAACATTCACTACAACAGCTTCAACTCTCAGATAACTGAGAAGAAGAACCAGAGTTTTCTAGAAATGATGAAGTCCGCAAAGGATGGTGCCCAGGATGAAGATCTAAAAAACGAGGAAGCATTTTTTCTTAAGAAAGAATCCCAAACAGCAGAACTGAAAGTGGAATTGGATGGGAAAAGTACTGAACAAAAGCCAGACACACCAAGATCAAAACATTCCGCAACCGAGCAACGTAGGAGGAGTAAAATTAATGACAGATTCCAGATGCTACGGGAGCTTATTCCTCACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTCTTGGAGGTTATAGAATATATTCATTTTTTACAAGAGAAAGTGCATAAGTATGAAGGTTCATTCCAAGGGTGGAATCATGATCCAGAAAAGTTGATGCCATGGAGAAATAATGACAAGCCATCAGAAAGTTTTGAACATGGTGGCACAAATAGTGGGTCAGTTCCATCTCCATCATTTCTGTTTGCTTCAAAGATGGACGAGAAAAATATCACTATCTCCCCGAAAATTCGTGGAAGTACTCAGAATGTGGAACCTGGCTTGAGCACAGCAACTAACTTCAAGACAATGGATCATCATCCTAGAATAGCGAACAATGCTTTTCCCATTCCTAGTTCTCCACAGCCAAATTTCTTCACTCCAACTCAATGTGGAGGTCAAGGTGGAGTGGTGTCTCAGCTCACACGTAGATTGGCATCTGATGCAGAGAATGCAATATATCAACCTTTCGAGGAGTGTCAGACTATGATGGCTACAAGTGAAAAACTGAAAGATAAAGAGCTCACTATTGAAGGTGGTGCTATTAGCATATCAAGTGTGTACTCAAAAGGATTGTTGGATACACTTACACATGCACTACAAAGTTCAGGAGTGGATTTGTCACAATCTAGTATCTCAGTACAAATTGAACTTGGCAAGCAAGCAAAAATCAGACCAACTATACCAATGTCAATGTGTGGTGCTAAGGGTGATGAAGTTCCTTCTAACAATCAGAGGATGATGCGATCTAGAGTTGCAAGCTCAGAGCATTCTGACCAGCCAGTAAAAAAGCTAAAGACTTGCAGAACCTAA 1521 0.3997 MKFLKTHNFLQPLERAEAKARDEISLLSVSTKPNSPSVEHLLPGGIGTYSISHVSYFDNNNERVPKPEASLFTVNQGISTDRNDENSNCSSYTSSGFTLWEDSAVKKGKTGKENNVSDKTILGGTWTLSDRTSQSFSNIHYNSFNSQITEKKNQSFLEMMKSAKDGAQDEDLKNEEAFFLKKESQTAELKVELDGKSTEQKPDTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNHDPEKLMPWRNNDKPSESFEHGGTNSGSVPSPSFLFASKMDEKNITISPKIRGSTQNVEPGLSTATNFKTMDHHPRIANNAFPIPSSPQPNFFTPTQCGGQGGVVSQLTRRLASDAENAIYQPFEECQTMMATSEKLKDKELTIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQSSISVQIELGKQAKIRPTIPMSMCGAKGDEVPSNNQRMMRSRVASSEHSDQPVKKLKTCRT* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0149 506 MobiDBLite consensus disorder prediction 484 506 - -
Lan1g0149 506 Gene3D - 202 274 IPR036638 GO:0046983
Lan1g0149 506 MobiDBLite consensus disorder prediction 190 220 - -
Lan1g0149 506 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 3 503 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lan1g0149 506 SMART finulus 210 260 IPR011598 GO:0046983
Lan1g0149 506 Pfam Helix-loop-helix DNA-binding domain 206 255 IPR011598 GO:0046983
Lan1g0149 506 MobiDBLite consensus disorder prediction 488 506 - -
Lan1g0149 506 CDD bHLH_AtBIM_like 204 279 - -
Lan1g0149 506 PANTHER TRANSCRIPTION FACTOR BIM1 3 503 - -
Lan1g0149 506 MobiDBLite consensus disorder prediction 278 299 - -
Lan1g0149 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Lan1g0149 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 274 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0149 Lan-Chr1 1107743 1112227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0149 4 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 44.581 2.24e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g0149 HLH 4.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0149 - - lang:109344725 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1218 12 18218168 18225534 Lan1g0149 1 1107743 1112227 LSH
Lan1g1077 1 20915302 20925526 Lan1g0149 1 1107743 1112227 LSH