Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0140 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATAGGCAAGTAACTTTCTCAAAGAGAAGATCTGGGTTACTGAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCAGAAGTGGCTCTTATAGTCTTCTCCACAAAAGGCAAGCTTTTTGAGTACTCCAGCGACCCCTGTATGGAAAGAATTCTTGAACGATATGAGAGGTATTCATATACGGAGAGACAGGTTGATGCTAACAATGATCAAACATCAAATGAAAACTGGATTTTGGAACACGCAAAACTCAAAGCAAGAGTAGAAGTCCTACAGAGAAATCAAAGGAATTTCATGGGAGAAGATCTGGATAGCCTAAGTCTGAAAGAGCTTCAGAATTTGGAACAACAACTTGATTCTGCTCTCAAACACATAAGAACACGAAAGAATCAACTCATGTATGAATCTATTTCTGGGCTTCAGAAAAAGGATAAGGCACTTCAGGAACAAAACAACATTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCTTTGGCCCAGCAGGAGCAACAGAGAGTGCAAAATGGTGTGGATGTGAGCTCTGTCCTCGTAAATCAACCATTGGAGTCCTTGAATGTTGGAGGTGGGTCAGGAGATAATGAAGGAACTGCAACGCAAACTCGAACTACCCCTCTTCTTCCACCATGGATGCTTCGTCCTATAAATGAATAG 717 0.417 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYTERQVDANNDQTSNENWILEHAKLKARVEVLQRNQRNFMGEDLDSLSLKELQNLEQQLDSALKHIRTRKNQLMYESISGLQKKDKALQEQNNILAKKIKEKEKALAQQEQQRVQNGVDVSSVLVNQPLESLNVGGGSGDNEGTATQTRTTPLLPPWMLRPINE* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0140 238 Coils Coil 89 109 - -
Lan1g0140 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan1g0140 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 209 - -
Lan1g0140 238 Coils Coil 123 146 - -
Lan1g0140 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Lan1g0140 238 Pfam K-box region 84 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan1g0140 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 Coils Coil 159 186 - -
Lan1g0140 238 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lan1g0140 238 MobiDBLite consensus disorder prediction 205 227 - -
Lan1g0140 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lan1g0140 238 MobiDBLite consensus disorder prediction 205 229 - -
Lan1g0140 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan1g0140 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0140 Lan-Chr1 1043949 1050836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0140 1 219 MADS-box Gene Family AT1G26310 58.369 1.40e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan1g0140 K-box 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0140 K09264 K09260 gmx:100784742 343.584